KEGG   Ictalurus punctatus (channel catfish): 100304592
Entry
100304592         CDS       T04658                                 
Symbol
tnfa
Name
(RefSeq) tumor necrosis factor a (TNF superfamily, member 2)
  KO
K03156  tumor necrosis factor superfamily, member 2
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu04010  MAPK signaling pathway
ipu04060  Cytokine-cytokine receptor interaction
ipu04150  mTOR signaling pathway
ipu04210  Apoptosis
ipu04217  Necroptosis
ipu04350  TGF-beta signaling pathway
ipu04620  Toll-like receptor signaling pathway
ipu04621  NOD-like receptor signaling pathway
ipu04622  RIG-I-like receptor signaling pathway
ipu04625  C-type lectin receptor signaling pathway
ipu04920  Adipocytokine signaling pathway
ipu05132  Salmonella infection
ipu05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    100304592 (tnfa)
   04350 TGF-beta signaling pathway
    100304592 (tnfa)
   04150 mTOR signaling pathway
    100304592 (tnfa)
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    100304592 (tnfa)
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    100304592 (tnfa)
   04217 Necroptosis
    100304592 (tnfa)
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    100304592 (tnfa)
   04621 NOD-like receptor signaling pathway
    100304592 (tnfa)
   04622 RIG-I-like receptor signaling pathway
    100304592 (tnfa)
   04625 C-type lectin receptor signaling pathway
    100304592 (tnfa)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    100304592 (tnfa)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    100304592 (tnfa)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    100304592 (tnfa)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04052 Cytokines and neuropeptides [BR:ipu04052]
    100304592 (tnfa)
   00536 Glycosaminoglycan binding proteins [BR:ipu00536]
    100304592 (tnfa)
Cytokines and neuropeptides [BR:ipu04052]
 Cytokines
  Tumor necrosis fators
   100304592 (tnfa)
Glycosaminoglycan binding proteins [BR:ipu00536]
 Heparan sulfate / Heparin
  Cytokines
   100304592 (tnfa)
SSDB
Motif
Pfam: TNF Cohesin Sdh_cyt
Other DBs
NCBI-GeneID: 100304592
NCBI-ProteinID: NP_001187101
Ensembl: ENSIPUG00000016025
UniProt: Q8JG37
Position
12:complement(26554442..26555962)
AA seq 230 aa
MASDSQVVLDVDGPRVTIVREKASWSSSGVWRTCGVLLAVALCAAAAVCFSQNKTHNKPD
ETQEIKHSLRQISQTAKAAIHLSGHYNPQVSSVSMQWFDNADQSFSSGLKLEDNEIKILR
DGLYFVYSQASYRLLCKAEGDETEGEVMHMSHKVSRWSDSYSSWKPLLSATRSACKKTTE
EYQKYWYGAVYLGAAFNLKAGDRLRTVMDEKLLPKVESAGGKTFFGTFSL
NT seq 693 nt   +upstreamnt  +downstreamnt
atggccagtgacagtcaggtggtattggatgtggacggaccccgggtgacgatcgtacga
gagaaggcctcgtggtcttcttcaggagtttggagaacctgtggagtccttctcgccgtg
gctctctgcgctgccgccgctgtctgcttttctcaaaacaagacgcacaacaaaccagac
gagacccaagaaatcaagcactctctcaggcagatttcccagactgcgaaggctgcgatc
catctctcaggtcactacaacccgcaggtttcgagcgtatctatgcagtggttcgacaac
gcagaccagtccttctcttcaggcttgaaactggaggacaacgagatcaagattctccgc
gacggcctctacttcgtctacagccaggcctcgtaccgtctgctatgtaaagccgagggc
gacgagaccgagggcgaggtgatgcacatgagccacaaagtgtctcgctggtctgactct
tacagctcatggaagccgttgctgagcgccaccagatcggcctgcaagaaaacaaccgaa
gagtaccagaaatactggtacggcgccgtctacctcggggccgcgttcaacctgaaggcc
ggagaccgactgcgcaccgtcatggacgagaagctgctgcccaaagtggagagcgccggc
gggaaaaccttcttcggaacgttctccttataa

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