KEGG   Ictalurus punctatus (channel catfish): 100305024
Entry
100305024         CDS       T04658                                 
Symbol
valopa
Name
(RefSeq) vertebrate ancient long opsin a
  KO
K04256  c-opsin
Organism
ipu  Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ipu01009]
    100305024 (valopa)
  09183 Protein families: signaling and cellular processes
   04030 G protein-coupled receptors [BR:ipu04030]
    100305024 (valopa)
Protein phosphatases and associated proteins [BR:ipu01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     100305024 (valopa)
G protein-coupled receptors [BR:ipu04030]
 Rhodopsin family
  Vision
   Opsin
    100305024 (valopa)
SSDB
Motif
Pfam: 7tm_1 7TM_GPCR_Srw 7TM_GPCR_Srv 7TM_GPCR_Srsx 7tm_4
Other DBs
NCBI-GeneID: 100305024
NCBI-ProteinID: NP_001187192
Ensembl: ENSIPUG00000019050
UniProt: C3V150
Position
3:24342130..24358577
AA seq 389 aa
MGSFGTAVRGVNYTEAADVIQPEDPFSGPVKSIAPWNFKVLAAWMVVITSLSLSENFLVM
LVTYKFKQLRQPLNFLIVNLSLADFFMSLIGGTLSVVTNYRGYFFLGSWACVLEGFAVTF
FGIVGMWSLATLAFERYFVICRPLGNVRLQVKHAVLGLLFVWTFSFIWTIPPVLGWSSYT
VSKIGTTCEPNWYSGDPHDHTFIITFFLTCFILPLAVIIVCYSKLLRKLRKVSNSHGRLV
NARKPDRQVSHMVVVMIVAFVVAWTPYALFSFIVTVHPTIYLDPIMAAVPAFFAKTAAVY
NPIIYVFMNKQFRKCLIQLLSCSGNTTVEVNQSTDRAGMIGESNTGEMSAIAARIPAAST
TSPPKANEQHSNSCSYSQLPIPENKVCPM
NT seq 1170 nt   +upstreamnt  +downstreamnt
atgggctcgtttggcacggcagtgcgcggtgttaattacacagaagcagctgatgtgatc
caaccagaagatccattttccggacccgtgaaatccattgctccgtggaactttaaagtg
ctggcagcatggatggtcgtgatcacgtcgctgtctctgtccgagaactttctggttatg
ttggttacctacaagtttaaacaactcagacagccgttaaactttctcattgttaattta
tcgctggcagactttttcatgtcactgatcggtgggactttaagtgttgtcacaaattac
cgtggctattttttcttggggtcctgggcgtgcgtgctggagggatttgcggtcactttt
ttcggtatagtgggtatgtggtccctggctacccttgcatttgagagatactttgttatc
tgtcgtccattgggaaatgtccgtctgcaggttaaacatgcagtactgggactgctgttt
gtctggaccttctcttttatctggaccatcccacctgtactgggctggagcagctacaca
gtcagcaagatcggcaccacctgcgaacccaactggtactctggtgacccgcatgaccat
actttcattatcacgttctttctcacctgtttcatcttgcctctggctgtcatcattgtg
tgttacagtaaattgctgcgcaagctgagaaaggtgtccaactctcatggccggttggtg
aatgcccggaagcctgaccgacaggtgtctcatatggtagtggtgatgattgtagccttc
gtggtggcctggacaccatacgcactgttctctttcatcgttactgttcaccccaccatc
tacttagaccctataatggctgctgttcctgctttctttgcaaaaactgctgctgtctac
aaccccatcatctacgtctttatgaacaaacagttcaggaagtgcctgattcaactgctc
agctgcagcggcaacaccacagtagaggtgaaccagtctactgaccgagcaggcatgatc
ggtgagagcaacacaggcgagatgtcagccatagctgcccgaatccctgctgctagtacc
acttcaccaccaaaagctaatgagcagcacagtaactcctgttcctacagccagctgcct
atcccagaaaacaaagtgtgccctatgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (8)   
   RefSeq(nuc) (2)   
   GenBank (3)   
   EMBL (3)   
Protein domain (5)   
   Pfam (5)   
All databases (35)   

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