KEGG   Ictalurus punctatus (channel catfish): 108259062
Entry
108259062         CDS       T04658                                 
Symbol
tfdp1b
Name
(RefSeq) transcription factor Dp-1b isoform X1
  KO
K04683  transcription factor Dp-1
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03083  Polycomb repressive complex
ipu04110  Cell cycle
ipu04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    108259062 (tfdp1b)
 09130 Environmental Information Processing
  09132 Signal transduction
   04350 TGF-beta signaling pathway
    108259062 (tfdp1b)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    108259062 (tfdp1b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ipu03000]
    108259062 (tfdp1b)
   03036 Chromosome and associated proteins [BR:ipu03036]
    108259062 (tfdp1b)
Transcription factors [BR:ipu03000]
 Eukaryotic type
  Helix-turn-helix
   Fork head/winged helix cell cycle-controlling factors, DP
    108259062 (tfdp1b)
Chromosome and associated proteins [BR:ipu03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     108259062 (tfdp1b)
SSDB
Motif
Pfam: DP E2F_TDP
Other DBs
NCBI-GeneID: 108259062
NCBI-ProteinID: XP_017313688
Ensembl: ENSIPUG00000010569
UniProt: A0A2D0Q4P7
Position
26:complement(7958523..7981866)
AA seq 414 aa
MMARDGGLKEASGELKVFTTQNVSPGTGEFPPRNPGVLFVREGAVVSLVTVHPSSVTGVK
QIMPKALGGPGVNVLSHVVIGTPQRPSAPAAAALLTSPRTPSAQFLTPQTQARESSPWSS
GRSSRRGDKNGKGLRHFSMKVCEKVQKKGVTSYNEVADELVTELSSGDNISPNDAHVYDQ
KNIRRRVYDALNVLMAMNIISKDKKEIKWIGFPTNSAQECKDLEAERQRRLERIKQKQSQ
LQELILQQIAFKRLVQRNREAEQKNHRPPPNTVIHLPFIIVNTSKKTVIDCSISNDKFEY
LFNFDNMFEIHDDIEVLKRMGMALGLDSGKCTPENLKIARTLIPKALEPYVTDMAQGVHR
HSHTNSDNGAVATMASSSNSSYHGSSRDTPASFLEDEEEDEDEDDEDFDDDDED
NT seq 1245 nt   +upstreamnt  +downstreamnt
atgatggcaagagatggtggcctgaaggaagccagtggagagctgaaggtttttaccact
cagaacgtgagtcctggaacaggtgagttcccacctcggaatccaggtgtgctgttcgtc
agagaaggtgctgtcgtgtctctcgtgactgtccatccttcttctgtcaccggagtgaag
cagataatgcctaaagcactcggaggccctggcgttaatgtgctttcacatgtggtgatt
ggcactcctcagaggcccagtgctcctgctgctgccgctctgttaaccagccccagaact
cctagtgctcagttcctcacgccacagacacaggcgcgagagtcttcaccctggtccagt
ggacgcagcagtagaagaggggacaagaatgggaaaggcttgagacatttctccatgaag
gtgtgcgagaaggttcagaagaaaggcgtaacctcctataatgaggtcgcagacgagctg
gtgactgagctgagttctggagacaacatctctcccaatgacgctcatgtttatgaccag
aagaacattcggcggcgggtatatgatgcattaaatgtcctaatggcgatgaacatcatc
tccaaagacaagaaggaaatcaaatggatcggcttcccaactaattctgctcaggagtgc
aaggacctggaggccgagcgccagcgacgacttgaaagaatcaagcagaaacagtctcag
cttcaagagcttatactacagcaaatagccttcaagcgcctggtgcaaaggaatcgcgag
gcagagcagaagaaccacagacctcctcccaacacagtcatccacctccccttcatcata
gtgaacaccagcaagaagacagtcatcgactgcagcatctcaaatgacaagtttgagtac
ctgtttaactttgacaacatgtttgagatccatgacgacatcgaggtgctgaagcgcatg
ggcatggcgcttgggctcgactcgggcaaatgtacgccggaaaatctgaagatagcccga
accctcatacctaaagcgctggaaccttatgtaacagatatggcacagggagtccacaga
cattctcatacaaacagtgataatggagctgttgccactatggcctccagctccaacagc
tcgtaccatggcagctctcgtgatactccggcatccttcctggaggacgaggaagaggac
gaagatgaggatgatgaggactttgatgatgatgatgaagattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (36)   

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