KEGG   Ictalurus punctatus (channel catfish): 108259403
Entry
108259403         CDS       T04658                                 
Symbol
capn1b
Name
(RefSeq) calpain-1 catalytic subunit
  KO
K01367  calpain-1 [EC:3.4.22.52]
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu04141  Protein processing in endoplasmic reticulum
ipu04210  Apoptosis
ipu04217  Necroptosis
ipu04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    108259403 (capn1b)
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    108259403 (capn1b)
   04217 Necroptosis
    108259403 (capn1b)
   04218 Cellular senescence
    108259403 (capn1b)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:ipu01002]
    108259403 (capn1b)
Enzymes [BR:ipu01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.22  Cysteine endopeptidases
    3.4.22.52  calpain-1
     108259403 (capn1b)
Peptidases and inhibitors [BR:ipu01002]
 Cysteine peptidases
  Family C2: calpain family
   108259403 (capn1b)
SSDB
Motif
Pfam: Peptidase_C2 Calpain_III EF-hand_6 EF-hand_1 EF-hand_8
Other DBs
NCBI-GeneID: 108259403
NCBI-ProteinID: XP_017314388
Ensembl: ENSIPUG00000012379
UniProt: A0A2D0Q7W2
Position
27:2091161..2117137
AA seq 704 aa
MYVFGGMSSRIHYERLRAEGAGTNERALPFLNQDYEALKQECLESGSLFEDPCFPARPPS
LGFKELAPHSSKTRGVEWKRPNELTADPQFIVGGATRTDICQGALGDCWLLAAIASLTLN
DKLLHRVVPHGQSFTDDYAGIFHFQFWQFGDWVDVVIDDRLPVKDGELVFVHSAEGSEFW
SALLEKAYAKLNGSYEALSGGSTTEGFEDFTGGVSEMYELKSAPRDLPRIITKALERGSL
LGCSIDITSAFDMEAVTFKKLVKGHAYSVTGLKEVDFRGNREKLIRIRNPWGQVEWTGAW
SDNSSEWDQVDPSEREELNCQKEDGEFWMSFQEFKRQFSRLEICNLTADALSDDSLSFWN
TIKFDGTWRRGSTAGGCRNHPNTFWINPQYKITLLEEDDDPDDPEVACSFLVALMQKDRR
RYRKQGQDMHTIGFAIYEVPEESRGCQSVHLKKEFFLRNSSCARSETFINLREVSTRHRL
PPGEYLIVPSTFEPGKEADFVLRVFTEKQSETEEMDDEVSFTLDEEEDITEEDIDSSFRN
MFAQLSGEDMEISVHELRTILNKVVSKHRDLKTDGFSLESCRSMVALMDKDGSARLGIVE
FQILWNKIRKWLGIFREFDLDKSGTMSSYEMRLAVENAGFKLNNKLNQVLVARYADQELI
DFDNFICCLVKLEAMFRTFIQMDKDGSGVAELSISEWLYLTMCG
NT seq 2115 nt   +upstreamnt  +downstreamnt
atgtacgtgtttggtgggatgtcgtcgagaattcattacgaacgcctgcgggcagagggc
gcgggcaccaacgagcgagcgctgcccttcctcaaccaggactacgaggcactgaagcag
gagtgtttggaaagcggcagtctcttcgaggacccgtgtttcccggcacggccgccgtcg
ctcggattcaaggaactagcgcctcactcgtccaaaacgcgtggagtcgagtggaagcga
cccaacgagctgacggctgatcctcagttcatcgttggaggagccacccggaccgatatc
tgccaaggagctctgggtgactgctggctgttggccgccatcgcgtctctcactctgaac
gacaagctcttgcacagggtggttccgcacggccagagcttcacggacgattacgccggc
attttccactttcagttctggcagttcggcgactgggtggacgtcgtcatcgacgaccgt
ctgcccgtgaaagacggggagctcgttttcgtgcactcggcagaagggtccgagttctgg
agcgccctgctggagaaagcctacgctaagctgaacggctcgtacgaggctctgtccgga
ggctccaccaccgagggcttcgaggatttcacaggcggagtgtccgagatgtacgagctg
aagtcggcacccagggatctgccccgcattatcacgaaggccctggaacggggatcgctg
ctcggctgttctatagacatcaccagtgcctttgacatggaagcggtgaccttcaagaag
ctggtgaaaggtcacgcctactcggtgacgggactcaaagaggtggatttccgcggtaac
agagaaaagctgatccgtatccggaacccatgggggcaggtggagtggacaggggcatgg
agtgacaattcatccgaatgggaccaggttgatccgtccgaaagagaggagttgaactgc
caaaaagaggacggagagttctggatgtcgtttcaggagtttaagcgtcagttctcgcgc
ttggagatctgtaacctgacggcggacgcgctaagtgacgacagtctgagcttctggaac
accatcaagttcgacggcacctggaggagagggagcacggcgggaggctgcaggaatcat
cccaacacattctggataaacccgcagtacaagatcacgctgctggaagaggacgatgac
cccgacgatcccgaggtggcctgcagcttcctggtggcactgatgcagaaggaccggcgg
cgctaccgtaaacagggccaggacatgcacaccatcggcttcgccatctacgaggtccca
gaagagtcccgcggttgccagagcgttcacctgaagaaggagtttttcctccgcaactcg
tcctgcgctcgttccgagaccttcatcaacctgcgcgaggtgagcacgcgacaccggctg
cctccaggcgagtacctcatcgtgccctcgacgttcgaacccgggaaagaagccgacttc
gtcctccgtgtgtttaccgagaaacagtccgagaccgaagagatggacgacgaggtgtcg
ttcacgctggacgaagaggaggacatcaccgaggaagatatcgactcctcgttccgaaac
atgtttgctcagctttctggtgaggatatggagatatcagtccatgagctgaggaccatc
ctgaacaaagtagtgtccaaacaccgggatctgaagacggacgggttcagtttggagtcg
tgcaggtccatggtggccctcatggataaagacggaagcgctcgtctgggaatcgtggag
ttccagatcctgtggaataagatcaggaagtggctgggaattttccgggaatttgacctg
gacaaatcaggaaccatgagctcgtatgagatgcgattggccgtggagaatgctggtttt
aagctcaacaacaagctgaaccaggtgctcgtggcgcgttacgccgaccaagagctgatc
gacttcgacaacttcatctgttgcctggtcaaactcgaggccatgtttagaacctttata
cagatggacaaagacggcagcggggtcgccgaactttccatctctgagtggctgtacctg
accatgtgcggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (39)   

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