KEGG   Ictalurus punctatus (channel catfish): 108260591
Entry
108260591         CDS       T04658                                 
Name
(RefSeq) protein PAT1 homolog 1
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108260591
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ipu03019]
    108260591
Messenger RNA biogenesis [BR:ipu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     108260591
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     108260591
SSDB
Motif
Pfam: PAT1 LRR_RI_capping
Other DBs
NCBI-GeneID: 108260591
NCBI-ProteinID: XP_053533519
Ensembl: ENSIPUG00000016627
UniProt: A0A9F7TDP1
Position
29:15803688..15812383
AA seq 771 aa
MFRFQSFDNDCTLEEEEEEGLVDDEDEIDQFNDDTFGAGAIDDDWQEEHARLAELDEKDG
LLGGGDASPVVPPPPESVPLPSSLPPPPTSSLSPLGSEDKAGDDLAESLAYLILDSDPAI
AVVGAAELDRSRLPPSAPSNQALPPGLSGVSRSLLSYQQKQHLLHRGTVPPLQQMNSHSI
WENNMGFGPVSVTHGLVTHMEESPLLSMMKELPKRIPPISREEGRDLSERVPPPRASSPV
IGSPPVRAIPIGTPPKQPMSHALNQQIHHPTAVHVRAPVPHRYPPPFPERLSPNTLLNIA
NSHLCCPPFPAGVAPVLSQIQRAQLLNSQVGPFPRGPGPAPPMLPGAAGGFRPYFGQPPP
PPRVGPHGPHPSHAPIRHNTTHLHPQHRRMLTQRMQSRDVGARGGGGDRRIRDPYSNLMT
QKEKDWVARIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERDRDSSRKEHTTKLITPQVAK
LEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTSRSDDEEKREKQVWNKRRQILYTVEK
MYSLLLEVQDFEKKFIQTPEEEREALLEQHKSNTLLLYNSLREKEWDDRVSDEQCLMIMS
VRKGKRLVARLLPFLTSSQAAAIVMGIARNLPALAKKDRQDQVLCWLVEPVVGVVQSMSS
SALTDLLQELQGGDGHFPRVLQNKFGVTLLYLVLSEGERMQSSDPNCQLMDDNRWTELVF
SVTRELLQVPSSSLSPPLFTPPNLLSLFSRYVDRQRLEQLQEKLQITALSR
NT seq 2316 nt   +upstreamnt  +downstreamnt
atgttccgttttcagtcctttgataatgactgcaccctggaggaggaggaggaggagggt
ctggtagatgacgaagatgaaattgatcagtttaacgatgacaccttcggcgctggagcg
atcgatgatgactggcaggaggagcatgcgcgactggcggagttggacgagaaagatggg
ctgctgggaggtggggatgcgtcccctgtcgtccctcctccgcctgagagcgtccctctt
ccctcctctctccccccaccccccacttcctccctctctccgcttggctccgaggacaag
gccggggatgacctggccgagtctctggcttaccttatcctcgactcggatccggccatc
gcagtggtgggcgcggccgagctggacagatcccgcctcccaccgtcagcgccgtccaat
caggctttgcctccgggtttgagtggcgtgtctcgctcgctgctcagctaccagcaaaaa
caacacctcctgcacagagggacagtgccgccgctgcagcagatgaactcgcacagtatt
tgggagaataacatgggcttcggtcctgttagtgttacacatggactcgtcacacacatg
gaggaatctccgctgttgtccatgatgaaagagcttccgaaacggattcctccaattagc
agggaggaggggcgggatttatctgaaagggtcccgccccctcgggcctcctcgcctgta
attggaagtccacctgtaagagcgatacctatcggaactccgcccaaacagcccatgagc
cacgccctgaatcagcagatccaccatcctactgcggtacatgtgagagctccagttcct
caccgttatcctcctcccttccccgagcgcctctcgcccaacaccctgctgaatatcgcc
aactctcacctgtgttgtcctccgttcccggctggagtcgctcctgtcctgtctcagata
cagcgagcccaactgctcaactctcaggtgggtccgttcccccggggtcctggtcccgct
ccacccatgctgcccggtgctgctggaggctttaggccttattttgggcagccgccccct
cctcctagagtgggccctcacggccctcatcctagccacgccccgatccgccacaacacc
acccacctccacccccagcaccgcaggatgctcacgcagaggatgcagagcagagatgtt
ggagcgagaggtggaggtggggacaggaggatcagggacccctacagtaatctaatgacc
cagaaggagaaggactgggtggcccgcattcagatgatgcagctgcagagcactgaccct
tacctggatgactactactaccagaattattatgaaaagatggagaagcgtcaggagcga
gaccgagacagcagcaggaaggagcacaccaccaaactcatcacgcctcaggtggccaag
ctcgagcacacctatcgcccagtgcagtttgccggttctctgggtaaactcaccgtgtcc
agcgtgaacaatccgaggaagatgattgatgctgtggtgacgagtcgctccgatgatgag
gagaagagagagaaacaggtgtggaataagagacggcagatcctctacacggtggagaag
atgtacagtcttctgctggaggtgcaggactttgagaagaaatttatccaaaccccagag
gaggagagagaagctctgctggagcagcacaaatccaacacactgctgctgtacaactct
ctgcgagagaaggagtgggacgacagagtgagcgatgagcagtgtctgatgatcatgtcg
gtgcgtaaagggaaacgcctcgttgctaggctcctcccattcctaacttcatcccaagct
gctgccatcgtcatgggaatcgcccgcaaccttcctgctctggccaagaaggaccggcag
gaccaggtgctgtgctggttggtggagccggttgtaggtgtggtccagtccatgtcgagc
tccgccctcactgacctgctgcaggagctgcaggggggcgacggtcactttccccgcgtg
ctgcaaaataaattcggtgtgacgctgctgtacctggtcctgagtgagggagagaggatg
cagagctctgatcctaactgtcagctcatggacgataatcgctggacggagttggtgttc
tcggtgacgagggagctgttacaggttccctcctcctccctttctcctcccctcttcact
cctcccaacctcctctcgctcttctctcgctacgtcgaccgccagaggctcgagcaactg
caagagaaactacagatcactgccttgtccaggtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (60)   
   KEGG ORTHOLOGY (1)   
   RefGene (55)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (71)   

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