KEGG   Ictalurus punctatus (channel catfish): 108265714
Entry
108265714         CDS       T04658                                 
Name
(RefSeq) helicase ARIP4 isoform X5
  KO
K10876  RAD54-like protein 2 [EC:5.6.2.-]
Organism
ipu  Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ipu03400]
    108265714
DNA repair and recombination proteins [BR:ipu03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Rad54 family proteins
     108265714
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ResIII InvH
Other DBs
NCBI-GeneID: 108265714
NCBI-ProteinID: XP_017323827
Ensembl: ENSIPUG00000024973
UniProt: A0A2D0QZK9
Position
5:11272520..11337163
AA seq 1396 aa
MLLLDESDSLTDQNQNVGYSSENESQGNNSLRWHCGLPSSSGKTSTRMPSCPLSHLEGRS
PNIGLDNAKKRISKPAHMRRNIRKLLKEHHLDVVTKVSQLEETKRRKRLDQRNNFTVAPE
LVYTHTLGDLCASLTYGSKESAVCVQTSNSSNAYSTEVSVLRTTAPIREAVCVSVDQSSV
EKTTSCFISKSANEDSESSGVPLNNAVNQPDAQERVLINVGHPEDDSDIYLSPQLACFVK
PHQIGGIRFLYNNLVESQKHFKSTPGFGCILAHSMGLGKTLQVISFIDILLRHTGAHTVL
AIVPVNTLHNWLAEFNLWVPPAEALPPDNDPGHITPRNFKVHILNDEHKTTSSRAKVVED
WYRDGGVLLMGYEMYRLLSLKKSFVTGRKKKNTKPCEQGIIDVDKEDHQQKLMKGIERAL
SQPGPDVVVCDEGHRIKNWHASTSQALKGIGTRRRLVLTGYPLQNNLYEYWCMVDFVRPG
FLGTRPEFSNMFVRPILNGQCVDSTPEDVQLMRYRSHVLHNLLEGFVQRCGHDVLCSQLP
QKQEHVILVRLTALQRALYVEFMNRFREAGNTGWLSLNPLKAFCVCCKIWNHPDILFEAL
ERENMASEQDLDLDDITASSTHCSANQSSKPCESSSNQGELTLSRLQEKSSQVITYEWAK
DIMAGYKKGILENSAKMVLFFHIIEESVMSGDKVLVFSQSLSTLTVIEEFLVKRTMPDYS
GSGVKQTWVRNVNYYRLDGSTSVSERERLINQFNDVTNNSARLFLLSTRAGCLGVNLIGA
NRVVVFDASWNPCHDAQAVCRVYRYGQRKPCHIYRLVSDFTLEKKIYDRQISKQGMSDRV
IDDLNPVLTFTRREVESLLNLVEEEPDPLDSAYLLHPQENMETVLRKACMRYPHLITKQP
FNHESLLMDRQDLKLTKEEKQAAKKSYENEKRASVPYTRPSYAHYYPASDQSLTNIPAFS
QRNWRPPSQLEDKPAASIHLAQTTLTPTVHKKEGQKESQVSAPSVKLGPKSALNFPVTYL
QKAGVFVQKTVTTTDIVIPGANNLSETKTKISAGESIHIIRGTKGTYIRTSDGRIFAIRA
VRKSRQSEESTDTKKDMPPSLENSISKSTSGSLSPDNMPKVLTPKAMTRPLSPDTPEILS
ELQRYTKVPPLPPSGVANPETASEKGVMILPQTNIASPDNDVPLDLRGTKRKSTSPPANE
YSSKQQTPEQRGSVPPSGQNYPFTGTYGLNSPINPGVNHALLSSLNSMWSPYFQPHVPMV
EHQLMFQISPDTYNLRNTALPSSSPTSSSITSSTTATSSSSISVSSSCLMSHEVPGTFVP
TFLSQYGQPLGMYPSMLMTQGIPGQAGSSILPQYVSSGPQGGANESCLVTDNRAPRAEDN
SHICDNHDDVIAMMDQ
NT seq 4191 nt   +upstreamnt  +downstreamnt
atgctgctgctggatgagtcagactctctaacagatcagaatcagaatgtaggctacagc
tctgaaaatgaatctcagggcaataattctttgcgatggcactgtggccttccctcttcc
tcaggtaagacttcaacacggatgccatcttgccctctgtctcacctggagggccgcagt
ccaaatattggcttggacaatgccaagaagagaatctcaaaacctgctcacatgcggagg
aacatcaggaagttgttgaaagagcaccacttggatgtggtaactaaagtttcccaactt
gaagagacaaagagacgcaagcgcctggatcagaggaacaattttactgtagctccagag
cttgtgtacacacacacactaggggatctgtgtgcaagtctgacatatggctccaaggaa
agtgcagtatgtgtgcaaacaagcaacagcagtaacgcatacagcactgaagtgtcagtg
cttcgaacaactgcccctataagagaggctgtgtgtgtttctgtagaccaaagttcagtt
gagaaaaccacctcatgcttcatcagcaaatctgccaatgaggattctgagagcagcggt
gtgcctcttaacaatgctgtcaaccaaccagatgctcaggagcgagtcctcatcaatgtc
ggtcacccagaggatgacagtgacatctacctctcccctcaacttgcatgtttcgtcaaa
cctcatcagattggaggaattcggtttctgtacaataacttggttgagtcacagaagcat
tttaaaagcacccctggttttggctgtatcctggctcacagcatgggcctgggtaaaact
ctacaggtcatctctttcatcgacatcctgctgcgccacaccggagctcacaccgtgctc
gccatcgtccctgtgaacacactacataactggttggcggaatttaatctctgggtcccg
cctgctgaagccctgccacctgacaatgaccctggccacattacgccacgtaactttaag
gttcacatccttaatgacgagcacaagaccacaagcagccgtgctaaggtagtcgaagac
tggtacagagatggtggtgtgctgctaatgggctatgagatgtaccgcctactctcactc
aagaaaagctttgtcactgggcgaaaaaaaaagaacacaaagccatgtgagcagggtata
attgatgtagataaggaggaccaccagcagaagctaatgaaaggcatcgagagggctctt
tctcagcctggtccagatgtggtggtctgtgatgagggccaccgcattaagaactggcat
gccagcacctcacaggctctgaagggcattgggacacggcggcggctagtgctgactggt
tacccactgcaaaacaacttgtatgagtactggtgcatggtggactttgtgcgtcccggc
ttcctgggcacacggcctgagttcagcaacatgtttgtgcggcccatcctgaatggccag
tgtgtggacagcacacctgaagatgtacagctcatgcgctaccgcagccatgtgctacac
aatctgttggaaggctttgtacaaagatgtggacatgatgtgctatgctcccagctgcca
cagaagcaggagcatgtaattttggtgcgtctgacggcactgcagcgcgcactctatgtt
gaattcatgaatcgctttagagaggctggaaatactggctggcttagccttaacccactt
aaagccttctgtgtctgctgcaaaatctggaaccaccctgacatactgtttgaggcactt
gaaagggaaaatatggccagtgagcaggatctggacctggatgacatcactgctagcagt
actcattgctcagccaatcagagctcgaaaccctgtgaatcaagcagcaatcaaggagaa
ctgactctaagtcggctgcaggagaaatccagtcaggttattacatatgaatgggcaaaa
gacatcatggcaggctataagaaaggcatcttagaaaattcagctaagatggtcctgttt
tttcacattattgaggaaagcgtcatgagtggagacaaggtcttggttttcagtcagagt
ctgtccacgcttacagtcattgaagaatttctggtcaagagaacgatgcctgactatagc
ggaagtggtgtgaagcagacctgggtccgcaatgtcaactactataggctggatggaagc
acctcagtttcagagcgagaaaggcttataaaccagtttaatgatgtgacaaataattct
gctcggctttttctgctgtccaccagggctggctgtcttggtgtgaacttgattggtgcc
aatcgtgtggtggtgttcgatgcctcttggaatccatgccatgatgctcaagctgtgtgc
cgtgtttatcgctatgggcagcgcaagccatgccacatctacagacttgtgtctgacttt
accttggaaaagaaaatctatgaccggcagatctccaaacagggaatgtctgatcgtgtg
atagatgacttgaatcctgttctgacattcacacgccgggaggtggagtctctcttgaac
cttgtggaagaggagcctgatccattagactctgcctatctactccaccctcaggaaaac
atggagacagtcctcaggaaagcctgtatgagataccctcaccttataaccaagcaaccc
tttaaccatgagtccttactgatggaccgacaagacctcaaacttacaaaggaggagaag
caagcagctaagaagagctatgagaatgagaagagagcatcagtgccctacacacgtcca
tcatatgcacactactacccagctagtgaccaaagccttaccaacatccctgccttcagc
cagagaaactggaggcctccctcacagctggaggataaaccagctgccagtattcacctg
gcacagacaaccctaacaccaacagtgcacaaaaaggaaggccagaaggaaagtcaggtt
tctgccccctctgtgaaattaggccccaaatctgctctcaattttccagtcacctaccta
cagaaagcaggagtctttgtacagaagactgtcactactacagatattgtgattcctggt
gcaaacaatttgtcagagacaaagaccaagataagtgcaggcgaaagcatccacatcatc
agaggaactaaaggaacctacattcggacatcggatggaagaatctttgccatccgtgct
gtgagaaaatccagacaaagtgaagagagtacagacacaaagaaagacatgccaccctca
ctggagaactccataagtaagagcacgagtggtagtctgtcccctgataacatgccaaaa
gtcttaactcccaaagccatgactcgacctctctccccagatacaccagaaattctgagt
gagcttcagcgttacaccaaagtgccacctctgcctccctcaggagtggccaatccagag
acagcctcagaaaagggagttatgattctgcctcaaaccaatattgcctcaccagacaat
gatgtgccactggacctaaggggcacaaagcgcaaatccacatcaccacctgccaatgaa
tattcgtccaagcagcaaactccagaacaaagaggttctgttccaccttctggacagaat
tatccattcacaggtacttacggcttaaattctcccatcaaccctggtgtaaaccacgcc
cttctgagctcactcaactctatgtggtcaccctacttccaacctcatgttcctatggtt
gagcaccaactcatgttccagatctctccagatacctacaaccttagaaatacagctttg
cccagctcctccccaacatcctccagcatcacctctagtactacagcaacttcatcctcc
tctatttcagtttcttcatcatgcttgatgagccatgaagtacctgggacgtttgtgccg
acatttctgtcacaatatgggcaaccattgggtatgtacccatccatgctaatgactcaa
gggattccaggacaggcaggatctagcatcctgccccagtacgtgtcctctggcccacaa
ggtggtgctaatgagtcttgtctcgtcacagacaatagagcaccgagagctgaggataac
agtcatatttgcgacaatcatgatgatgtaattgcaatgatggaccagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (39)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (11)   
   UniProt (1)   
   RefSeq(pep) (10)   
DNA sequence (14)   
   RefSeq(nuc) (10)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (71)   

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