KEGG   Ictalurus punctatus (channel catfish): 108266298
Entry
108266298         CDS       T04658                                 
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu04510  Focal adhesion
ipu04512  ECM-receptor interaction
ipu04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    108266298
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    108266298
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    108266298
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ipu04147]
    108266298
   00536 Glycosaminoglycan binding proteins [BR:ipu00536]
    108266298
Exosome [BR:ipu04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   108266298
Glycosaminoglycan binding proteins [BR:ipu00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   108266298
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 108266298
NCBI-ProteinID: XP_053536876
Ensembl: ENSIPUG00000000388
UniProt: A0A9F7RHK3
Position
6:16640800..16692156
AA seq 1634 aa
MRVLSGLVFLLATVLFRADPSRAEGCSSSSCGKCDCSGVKGSKGERGFPGLQGNMGFPGV
QGHEGPQGPMGPKGDIGEPGAHGMKGTRGLPGLPGIPGIPGHPGIPGQDGPQGPPGIPGC
NGTKGDRGRDGIPGIPGLLGPPGFPGDPGMKGDPGGVIGGFIPQKGDRGFEGSPGLPGAQ
GNPGPQGPVGPPGRDGLRGFPGDPGPPGPPGDKLSFVGPKGDKGEKGPAGLPGPPFPGVS
GGPTTVYGPKGERGDTGEKGDRCSPYQAGIKGEQGPPGPEGKVGKNGENGAKGEKGDRGT
DGFSGTKGQKGETGPPGYGHGAPGPKGASGLPGPIGEKGPPGYPGEPGLPGKNIMGTPGE
TGFPGENGQKGDKGADGESLRGPKGADGLPGPPGPPGPLNEDCEVSTGEPGPPGPPGLQG
EVGQKGDRGDTCTQCSASGPPGLPGSQGPKGNQGFPGQMGSKGQKGQPGPSGAPGFPGND
GVQGLIGAPGARGEPGDIYIAPELKGEKGSPGFPGSRGLPGIDGIPGKDGRPGLPGIKGE
PAREGIKGDRGQDGDPGIIGPTGERGPPGLPGFGRPGEPGEKGSQGAPGAPGKPGIPGSK
GEPGKGVSTPGPPGPPGPRGETGLHGLQGERGPAGDQGWPGLPGEKGDPGFPGIGLPGPP
GPKGHSGLPGAPGFPGDPGNPGQDGSPGLPGTPGQKGEPGIGLRGPKGSVGKPGVQGFQG
EKGNLGMPGVPGTEGQPGPPGPQGVKGDPGPPGFPGLSGPPGPPGHGEPGLPGPMGPPGE
PGPLGRIGSKGEKGPQGFPGPAMPGPQGEKGTPGLPGSPGPKGLSGEPGSPGKDGFPGER
GHKGDIGIMGIPGSPGHQGQAGAPGAIGPRGDPGLTGPRGEFGEPGPKGERGDPGIQGPA
GNMTEVEMEHMKGEKGDIGDRGDPGPTGQKGISGAPGDPGMRGKDGMPGTPGKSGEKGDP
GLPGQPGPDGQPGLKGSMGEMGLPGESGPKGSKGIAGQPGHQGFKGDPGGKGEKGVAGLP
GIGIPGIPGEKGEMGPPGFPGDAGQKGVKGALGIPGIPGTSGSKGDIGPIGYPGNPGVPG
EKGVPGLPGLPGQPGLEGRPGEPGLQGPPGPHGQKGESGTDGVPGAIGERGEPGLPGRGF
PGTPGQAGTKGEKGNQGPPGMSGSPGVPGSKGEKGLPGYVGSQGRPGERGLPGPSMEGPK
GDKGVQGEPGEPGQTGAPGPAGVPGSSGAKGEKGDKGFPGTQGIQGLKGDKGLTGQTGEP
GVPGYKGLKGEMGAPGLPGFQGLKGEAGLTGFKGELGDRGFPGAKGNDGPPGPPGINTFI
KGDIGLPGPVGPQGLPGLPGYPGPKGQQGLIGMQGIKGEDGAPGYNGFPGAKGEPGHTGP
SGPRGYPGPPGPDGVPGHVGPPGPSSMDHGFLVTRHSQSIEVPLCPQGTTPIYDGYSLLY
VQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPMPMSMAP
ITGESIKPFISRCAVCEAPAMVIAVHSQTVAIPPCPQGWLSLWIGYSFVMHTSAGAEGSG
QALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDSEMFSKPVPTTLKAGNL
RTHISRCQVCMKRT
NT seq 4905 nt   +upstreamnt  +downstreamnt
atgcgcgtcttaagcggcttggtgtttcttctggcaaccgttttgttcagagcagacccg
agcagagcggaggggtgttcaagctcatcatgtgggaagtgtgactgcagcggtgtgaaa
gggtcaaagggtgagagaggttttcctggtttacaaggcaatatgggatttcctggtgtg
caaggtcatgagggcccccaagggccaatgggaccaaagggagatattggtgagccaggg
gctcatggaatgaaaggaacacgtggccttcctggtttacctggtatcccgggaattcct
gggcatccgggtatcccaggtcaagatggcccacagggaccaccgggtatcccaggctgc
aacggaacaaagggggatcgaggtagagatggaatcccaggcataccaggattgctgggt
ccaccaggttttccaggtgacccaggaatgaagggtgacccaggtggtgttattggtggg
tttattcctcagaaaggagatagaggctttgaagggtcaccaggattgccaggggcacaa
ggaaatcctggaccacaaggaccagttggcccaccaggacgagatgggcttcgaggattt
cctggtgatcccggccctcctggccctcctggtgataagcttagttttgttggtccgaag
ggtgacaagggtgaaaaaggccccgcgggtctaccagggcctccttttcccggagtgagt
ggaggacccacaacagtttatggaccaaaaggtgaaagaggggacactggagaaaagggt
gacaggtgttcaccatatcaagcaggaatcaaaggtgaacaaggacctccaggcccagaa
ggaaaagtaggaaagaatggagaaaatggagctaagggggaaaaaggtgaccgtggtact
gatggcttttctgggacgaaggggcaaaagggagagacaggacctcccggatatggtcat
ggtgcacccggccctaaaggtgcttcaggcttaccaggaccgattggagagaagggcccc
cctgggtatcctggagagcctggtctcccaggaaagaacattatgggtactcctggagag
acaggctttcctggagagaatggacagaaaggagacaaaggtgctgatggagagtctctc
agaggacccaagggagctgatggacttcctggtccacctggacccccagggccattaaat
gaggactgtgaagttagtactggagaaccaggccctcctggacctcctggcttacaagga
gaggtgggacagaaaggtgacagaggagacacttgcacacaatgctctgctagtggacct
ccaggtttacctggtagtcaggggccaaaaggaaatcaaggtttccctggacaaatgggt
agtaaaggacaaaagggtcagcctggcccttctggagcacctggatttccggggaatgat
ggtgtccaaggtttgattggtgctcctggggcaaggggtgaaccaggtgacatctatata
gccccagagctgaaaggagaaaagggctcacctgggtttcctggcagtaggggattacca
ggcatagatggaattcctgggaaagatggacgtccaggtttaccaggaattaaaggagag
ccagctagagagggtattaaaggtgaccgtggccaggatggagatcctgggataatagga
cccactggtgagagaggacccccaggtcttcctggatttggccggcctggagagcctgga
gaaaagggcagtcagggagctcctggtgctccaggaaagccaggaataccaggatctaaa
ggtgaacctggaaaaggtgtaagtacaccaggacctccaggtccaccaggacctcgtggt
gagacaggattgcatggccttcaaggtgaaaggggtcctgctggagatcaaggatggcca
ggattaccaggtgaaaaaggtgaccctggttttccaggaatcggattaccaggtccacca
ggtccaaaaggtcactctggtttaccaggtgcaccaggattccctggagaccctggcaat
ccaggccaggacggttctcctggactcccaggaacacctggacaaaaaggtgaacctggc
attggcctcagaggacccaagggctctgtaggaaagccaggagtgcaagggtttcaaggt
gaaaagggtaatttaggaatgcctggagtccctggaaccgaaggacaacctggaccacct
ggtcctcagggtgtaaaaggtgaccctggccctcctggattcccaggtttgtcaggacca
cctggacccccaggacacggtgagcctggactacctggaccgatgggaccccctggggaa
cctggtcccttaggtcgaattgggtcaaagggagagaaaggtccgcaaggttttcctggt
cctgcaatgcctggtcctcaaggtgagaaaggcacccctggtttacctggatcaccaggg
cctaaggggttgtcaggggaaccaggaagtccaggtaaagatggattccctggggagaga
ggtcacaagggagatattggaataatgggaattccagggtcacctggacaccagggtcag
gcaggagcccctggagccattggaccaagaggtgaccctggtctgactgggcctagggga
gagtttggtgaaccgggccctaaaggagagagaggagatcctggtattcaaggaccagct
ggtaatatgactgaagtggaaatggagcatatgaaaggagagaagggagacatcggagac
agaggggatccaggccctacaggacagaaggggatttctggagcacctggagatcctgga
atgcgtggaaaggatggaatgcctggtacaccaggaaagtcaggtgagaaaggtgatcca
ggacttcccggacaaccaggaccagatggacagcctggattaaaaggcagcatgggagaa
atgggattgccaggagaatctgggccaaaaggcagtaaaggtattgctgggcagcctggt
catcaggggtttaagggtgatccaggaggaaaaggtgaaaagggagtggcaggtctgcca
ggcataggaattcctggcatccctggtgagaagggtgaaatgggcccacctggtttccct
ggggatgctggacaaaagggagtgaaaggtgcattgggaatccccggtatacctggaaca
tcagggtcaaaaggagacataggcccgattggttacccaggcaaccctggggtaccaggt
gaaaaaggagtccctgggttacctggattaccagggcagcctggtcttgaaggacggcca
ggtgaacctggtctgcagggtcccccagggccacatggacagaaaggagagtcaggaaca
gatggagtccctggagccattggagagaggggtgaaccaggtttacctggtagaggcttt
cctggaacccctgggcaggcaggcacaaaaggtgaaaaaggcaaccaaggtccccctggc
atgtctggaagccctggtgttcctggaagcaaaggagagaaaggcttgccaggatatgta
ggtagtcagggtcgacctggtgaaagaggactacccggaccatcaatggaggggcctaaa
ggggataaaggagttcagggagagcctggagagccagggcagactggtgctccaggtcca
gcaggtgttccaggtagttctggtgctaaaggagagaaaggagataaaggtttcccaggc
acacagggtattcagggtttgaaaggcgataaaggcctcactggtcaaactggtgaacct
ggcgttccaggctataaaggactaaagggtgaaatgggagctccgggccttcctggcttc
caaggattaaagggtgaggctggactgactggtttcaaaggagagcttggtgacagagga
tttccaggcgctaaaggtaatgacggccctcctggacctcctggaatcaatacctttata
aaaggagacattggtttgccaggaccagtgggtccccaaggtttaccagggttgccaggg
tatcctggaccaaaaggacagcaaggattgattggtatgcagggtattaaaggagaggat
ggggcaccaggatacaatgggtttcctggagctaaaggagaacctgggcatactggacct
tctggacccagaggatatccaggccccccaggtcctgatggtgtcccaggtcatgttggt
cctcctggaccctcctctatggaccatggcttcctagtgactcggcacagtcaatccatt
gaagtgcccctgtgtccacaaggcaccactccaatctatgatgggtactctctcctgtat
gtgcagggaaatgagcgatctcatggccaagacctgggtacggctggtagctgcttgagg
aagttcagccccatgccattcctcttctgcaacatcaacaatgtgtgtaactttgcctct
cgtaatgactattcctactggctcacatctcctgagcccatgcctatgagcatggctcct
atcactggcgaaagcatcaaacctttcatcagcagatgtgcagtatgtgaggctcctgcc
atggtgattgctgtgcacagtcagactgtagccatcccaccctgtcctcaaggctggtta
tctctgtggattggttattcctttgtcatgcacaccagtgcaggggctgagggctctggt
caggctctggcctctcctggctcctgtctggaggagttccgctcggctcccttcatcgag
tgtcatggccgtggcacctgcaactactatgctaactcctacagcttctggttggccacc
atcgaggatagtgagatgtttagcaaacctgtccccaccacactaaaggctgggaatctg
cgaactcacatcagtagatgtcaagtgtgcatgaagaggacttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (76)   
   KEGG ORTHOLOGY (1)   
   RefGene (71)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (2)   
   Pfam (2)   
All databases (94)   

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