KEGG   Ictalurus punctatus (channel catfish): 108268521
Entry
108268521         CDS       T04658                                 
Symbol
vps4a
Name
(RefSeq) vacuolar protein sorting-associated protein 4A isoform X1
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03250  Viral life cycle - HIV-1
ipu04144  Endocytosis
ipu04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    108268521 (vps4a)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    108268521 (vps4a)
  09143 Cell growth and death
   04217 Necroptosis
    108268521 (vps4a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ipu04131]
    108268521 (vps4a)
   03400 DNA repair and recombination proteins [BR:ipu03400]
    108268521 (vps4a)
Membrane trafficking [BR:ipu04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    108268521 (vps4a)
DNA repair and recombination proteins [BR:ipu03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    108268521 (vps4a)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 TIP49 AAA_16 AAA_22 AAA_5 AAA_14 RuvB_N IstB_IS21 AAA_25 AAA_18 DUF815 AAA_2 AAA_33 nSTAND3 RNA_helicase AAA_17 PhoH AAA_24 NACHT Mg_chelatase ResIII AAA_28 Parvo_NS1 AAA_7 bpMoxR AAA_30
Other DBs
NCBI-GeneID: 108268521
NCBI-ProteinID: XP_053538062
UniProt: A0A9F7RM36
Position
8:681159..686662
AA seq 463 aa
MNAVGLSTSGVDVTSQLPVALGALRGVAVDENLTKAIDLVTKATEEDKAKNYEEALRLYQ
HAVEYFLHAIKYEAHSDKAKESIRGKCMQYLERAEKLKSYLRNKDKQGKKPVKETQSNDK
SDSDSEGENPEKKKLQEHLMGAIVMEKPNVSWNDVAGLEGAKEALKEAVILPIKFPHLFT
GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVRNLFE
LARQRKPSIIFIDEVDSLCGSRSENESEAARRIKTEFLVQMQGVGTNNDKILVLGATNIP
WVLDAAIRRRFEKRIYIPLPEEPARATMFRLHLGNTPHSLSEADLRLLAHKTDGYSGADI
SIIVRDALMQPVRKVQSATHFKKVRGPSRSNPSVMVDDLLTPCSPGDPAAMEMTWMEVPG
DKLLEPIVCMADMLRSLSTTRPTVNAEDLLKVKRFTEDFGQEG
NT seq 1392 nt   +upstreamnt  +downstreamnt
atgaatgcggtgggtctatccacttccggcgtcgatgtgacgtcacagctcccagtggct
ctcggggctctgcgcggtgttgctgttgatgagaatttaacgaaagccatcgatctggtc
accaaagccacagaggaggataaggccaagaattatgaggaggctctgagactgtaccag
cacgctgtggagtatttcctacacgccatcaagtatgaggctcacagtgataaggcgaag
gagagtatcagggggaagtgtatgcagtacctggagcgggcagagaagctgaagtcctac
ctgaggaacaaggacaagcagggcaagaaaccagtgaaggagacacaaagcaatgacaag
agtgacagcgacagtgaaggtgagaacccagagaagaagaaactgcaggagcacctgatg
ggtgctatagtgatggagaagccgaatgtgagctggaacgatgtggctggactggaggga
gctaaagaggccctgaaggaagccgtcatcctgccaatcaaattccctcacctcttcaca
ggtaaacggactccatggagagggatcttgcttttcggacctcctgggacaggaaagtca
tacctggctaaagctgtagctacagaggctaacaactccaccttcttctccgtttcctca
tctgacctcgtgtccaaatggctgggggagagcgagaagttagtgaggaatctgtttgag
cttgcccgtcagcgtaaaccctccatcatcttcatcgacgaggtggactctctgtgcggc
tcacgaagtgaaaacgagagcgaagcagctcgcaggatcaagaccgagttcctcgtgcag
atgcagggtgtggggaccaacaatgataaaatcttggttctgggtgccactaacatccca
tgggttctggatgccgccatcaggagaaggttcgagaaacggatctacatcccgcttcca
gaagagccggctcgggccaccatgttccgcctccatttagggaacacgccccacagcctg
agcgaggccgacctgcgcctcctcgctcacaagactgacggctattccggcgctgacatc
agcatcatcgtcagagacgctctcatgcagcctgtccgaaaagtgcagtccgctacacac
ttcaagaaggtacgaggtccatcccgtagtaacccctctgtgatggtggatgaccttttg
accccatgttcccctggtgaccctgctgccatggagatgacctggatggaagtgcctgga
gacaaacttctggagcccatagtgtgtatggccgacatgctgcgctctctgtccaccact
cggcccacggtgaacgccgaagacctgctgaaggtgaagagattcaccgaggactttgga
caggaaggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (29)   
   Pfam (29)   
All databases (76)   

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