KEGG   Ictalurus punctatus (channel catfish): 108269223
Entry
108269223         CDS       T04658                                 
Name
(RefSeq) synaptic functional regulator FMR1 isoform X1
  KO
K15516  fragile X mental retardation protein
Organism
ipu  Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ipu03019]
    108269223
Messenger RNA biogenesis [BR:ipu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     108269223
   Factors involved in mRNA localization
    Other mRNA localization factors
     108269223
   mRNA cycle factors
    Stress granule specific factors
     108269223
SSDB
Motif
Pfam: FXMRP1_C_core FXMR_C2 KH_9 Tudor_FRX1 KH_1 Agenet
Other DBs
NCBI-GeneID: 108269223
NCBI-ProteinID: XP_017330436
Ensembl: ENSIPUG00000014418
UniProt: W5UBC9
Position
8:24218640..24229507
AA seq 570 aa
MEELAVEVRGASGAFYKAFVKDVHENTVTVTFENNWQPERQIPFHDVRFPPPAGVQKEIT
ESDEVEVYSRANDKEPCGWWQAKVRMVKGEFYVIEYAACDATLNEIVTLERLRPVNPNKA
TAKNPFLKIRLDVPEDLRQICAKDSAHKDFKKAVGAFNVTYDSDKKQLVILSVNEVTTKR
ATMLTDMHFRSLRTKMSLILRNEEASRQLESSRQLASRFHEQFVVRDDLMGLAIGTHGAN
IQQARKVPGVTNIDLDEETCTFHIYGEDQEAVRKARSYLEFSEDVIRVPRNLVGKVIGKS
GKLIQEVVDKSGVVRVRVEPENEKKSSPLEEGMVPFVFVGTKESISNARLLLDYHLNYLK
EVDQLRMERLQIDEQLRQIGGGPRAPSGRPEKEKPFSSDNGMGHSRGGKPFGRGGRGRRG
PTFASGTNSEASNASETESDHRDELSDWSLAPTDEESMGYPKRVPDGRKRGSGGGRGRGG
RGRGGGYKGEDVHWSESRPRNSRDSKPRLQEDSLQIRVDSNNERSVHTSRGPQGPISDSG
GPRQRSVKERGIKKDKPEGPDSQVVMNGVS
NT seq 1713 nt   +upstreamnt  +downstreamnt
atggaggagctggcggtggaagtgaggggcgcgagcggggctttctacaaggctttcgtg
aaggacgtgcatgagaacaccgtcactgtgacgtttgaaaacaattggcagccagagcga
cagatcccttttcatgatgtgcggttccctcctcctgctggggttcagaaagagatcact
gagagtgatgaggttgaggtgtactccagggctaatgacaaggaaccatgtgggtggtgg
caagccaaagtgcgcatggtaaaaggggagttttatgtcatcgagtacgccgcctgcgat
gccacgctcaacgagatcgtcacgttagagaggctgcggcctgtgaacccgaacaaagcc
accgcgaagaaccccttcctgaaaatccgactggacgttccagaagacctgcgacagatc
tgcgcaaaagactccgctcacaaagatttcaaaaaagccgtcggagcgtttaacgtcacg
tatgactctgataagaagcagctggtcattctgtcagtcaacgaggtgactactaaacgg
gcgaccatgttgacagacatgcacttcaggagcctgcgcaccaaaatgtccctcattcta
cggaacgaagaggccagtaggcagctggagagctctcgtcagttagcgtcacggttccac
gagcagttcgtggtgcgcgacgatctgatgggtttggccatcggcacacacggagccaac
atccaacaggcccgcaaagttcccggagtcactaacatcgacctagacgaggagacgtgc
acctttcacatatatggagaggaccaggaggctgtgcgcaaagccaggagctatctggag
ttttccgaagatgttatcagggtacccaggaatttagtaggaaaagtcattgggaagagc
gggaagctgattcaggaggtcgtggacaaatccggagtcgtccgagtgagagtggaacca
gaaaacgagaagaaatcatctccgttggaggagggcatggtgccgttcgtgtttgtcggg
acaaaagaaagcatctcaaacgcacgcctactgctcgactaccatctcaattatctcaag
gaggtggatcagttgcgaatggagaggctgcagattgatgagcagctacgacagatcggc
ggaggccccagagctccatcaggccgaccggagaaggaaaaaccattcagctctgataac
ggcatggggcattcccgagggggcaagccgttcggccgtggggggcgaggaagacgaggg
cctacgtttgcgtcaggcaccaattctgaagcatcgaacgcatccgagactgaatcagac
cacagagatgagctgagtgactggtctctggctcccaccgatgaagagtctatgggttac
cccaaacgagtcccggacggacgaaagaggggcagcggtggcggccggggacgaggggga
cgaggaagaggaggaggttacaaaggtgaggacgtacactggagtgagtcacgcccccgg
aactccagagattccaagccaaggctgcaggaggattcactacagattcgtgtcgacagc
aataacgagaggagtgtccacaccagccgaggccctcaggggcccatcagcgactccggc
ggcccccgacagaggagcgtcaaggagcgagggataaagaaagacaagccggaagggcca
gacagccaggtcgtcatgaacggcgtgtcgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (30)   

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