KEGG   Ictalurus punctatus (channel catfish): 108269236
Entry
108269236         CDS       T04658                                 
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
  KO
K14328  regulator of nonsense transcripts 3
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03013  Nucleocytoplasmic transport
ipu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    108269236
   03015 mRNA surveillance pathway
    108269236
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ipu03019]
    108269236
Messenger RNA biogenesis [BR:ipu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     108269236
   mRNA cycle factors
    P-body specific factors
     108269236
SSDB
Motif
Pfam: Smg4_UPF3 RRM_1
Other DBs
NCBI-GeneID: 108269236
NCBI-ProteinID: XP_017330466
Ensembl: ENSIPUG00000019249
UniProt: W5ULS7
Position
8:7776293..7781746
AA seq 463 aa
MKEDKENTRPREKKVEIRCEENEKTEKPNKEKKEAMTKIVIRRLPPSITKEELEEQLQPL
PEVDYLEFFTSDTSLYPHLFARAYLNFKNQEDIVLFRDRFDGYVFIDNRGQEYPAVVEFA
PFQKIAKKRSKKKDSKSGTIEEDTDYKKFLEIYNGDEEKFTSTTETLLEEIEAKTKELVA
KKTTPLLDFLKNKQRLREEKKEERRRRELERKRLRDEERRKWREEDRRKRKEAEKLKKAE
KAPEKDKDQPKDEQPRIKLLKKLEKQENSDNEKPKEKPKKPEREKLRDDRAPERADAKKR
QNGEHREDKPRKYEEDGRREHRDREVDRDRERDRERRQKEKERIKRQDEDRRKRRERHDG
ENAYKKREEESKKEKEYVWEKRRNENTGESTGHGQADKSDKSSKDAKKEENVKKDRLRNK
DRPAIQLYQPGARSRNRGATGASQAGDKKAERDAKNTQEKGEE
NT seq 1392 nt   +upstreamnt  +downstreamnt
atgaaagaagacaaggaaaatacgcggcccagagagaaaaaagtggagatcagatgtgaa
gaaaatgaaaaaacggagaagccaaataaagagaagaaggaggccatgacaaagattgtg
atccgccgcctccctcccagtataactaaagaagagctggaggagcagttacagcctctg
ccagaagtggattatctcgagttcttcacaagtgacaccagcctctaccctcatctgttt
gcaagagcatatctaaatttcaagaaccaggaggacattgttcttttcagagaccgcttt
gatggttatgtgttcattgacaatcgaggacaagaataccctgcagttgttgagttcgca
ccattccagaagattgctaaaaagaggagtaagaaaaaggattccaaaagtggaacaatt
gaagaagatactgattataagaagtttttggaaatctacaatggtgatgaggagaagttt
acttcaaccactgagacattattagaagaaatagaggccaagacaaaggaactagttgcc
aagaaaacaactcctcttttggacttccttaagaataaacagagattaagagaggaaaag
aaagaggagaggaggaggagagaactggagcgcaaacgcttgcgtgatgaagagcggcgg
aagtggagagaagaggacagaaggaagcgcaaagaagctgagaaattaaagaaagcagaa
aaggcacctgaaaaggacaaggaccaacctaaagatgagcagccaagaatcaagctcctg
aagaaactagagaagcaagagaatagtgacaatgaaaagccaaaagagaaacccaagaag
ccagagcgagagaaactgagggatgaccgagctccagagagagcagatgcaaaaaaacgt
caaaatggcgaacaccgagaggacaagccaagaaaatatgaggaagatggacgcagggag
catcgagaccgtgaagtggatcgagaccgtgaacgggatcgggagcgacggcaaaaagag
aaggagcgaatcaagaggcaggacgaggaccgtcggaagaggagagagcgtcacgatgga
gagaacgcctacaaaaagagagaggaggagagtaaaaaggaaaaggagtatgtttgggaa
aagagaaggaatgagaataccggtgaatccacaggacacggtcaagctgacaaatctgac
aagtcttctaaagatgctaaaaaggaagaaaatgtgaaaaaggatcgtttaaggaacaag
gatcgccctgccattcagctgtaccagccaggagcaaggagccgcaacagaggagctaca
ggagctagccaggctggggataagaaggctgagagggatgccaaaaatacacaagagaaa
ggagaagagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (41)   

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