KEGG   Ictalurus punctatus (channel catfish): 108269360
Entry
108269360         CDS       T04658                                 
Symbol
tdg.2
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase isoform X1
  KO
K20813  thymine-DNA glycosylase [EC:3.2.2.29]
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    108269360 (tdg.2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ipu03400]
    108269360 (tdg.2)
Enzymes [BR:ipu01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.29  thymine-DNA glycosylase
     108269360 (tdg.2)
DNA repair and recombination proteins [BR:ipu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     108269360 (tdg.2)
SSDB
Motif
Pfam: UDG
Other DBs
NCBI-GeneID: 108269360
NCBI-ProteinID: XP_017330680
Ensembl: ENSIPUG00000007686
UniProt: W5UMP6
Position
8:complement(18099990..18108098)
AA seq 407 aa
MEEKQFESQRQRMDSYQHWYHTTQQQFQPEPVPQYSQMVNVPYYQQDVKEYTVMNELSVH
EDPAQISPLHQLPVQPPALPSTPEKGKKRGRPPKQGKNDQTDAEVTVKKAKRTLDRFNGM
SVEEVMAKKLPDVITYNLDILIIGINPGLLSAYKGRHYPNPGNHFWKCLFLSGLTDEQLN
YMHDQTLPEQYGIGFTNMVERTTPGSKDLSNKEIREGGKQLLEKLQKYRPRIAAFNGKCI
YETFCKEIFGVKAKNLEFGLQPYKVPETETVCYLMPSSSPRCAQFPRAQDKVHFYIKLKE
LRDQLKGVVQNREIQETEYTFDLVLAKEDAKRMSIKEEQHDPGYEESSTSATLQTCSFYP
ANEQGAAHSEPSLALGQVGSNQWTMQPFADQIPDIRYSSNNETSQYF
NT seq 1224 nt   +upstreamnt  +downstreamnt
atggaagaaaagcagtttgagtctcagaggcagcgcatggattcatatcagcactggtat
catacaacacaacagcagtttcaaccagagccagttcctcagtacagccagatggttaat
gttccttattaccagcaggatgtcaaagagtatactgtaatgaatgaattatcagtccat
gaagatccagctcagatcagtccgcttcatcagctgcctgtccagcctccagctcttcca
tcaacacctgagaaagggaagaagcgtggaaggccaccaaagcagggaaaaaatgaccaa
actgatgctgaagtcactgtgaaaaaagccaaaagaactctggacagatttaacggcatg
tctgtggaagaagtcatggccaaaaaactgcccgatgtcatcacctacaatctggacatt
ctgataattggtatcaaccctggattgttgtcagcctataaaggaagacattacccaaat
ccaggaaatcatttctggaagtgcctgttcttatcagggctcacagatgagcaactgaac
tacatgcatgatcagactcttccggaacaatacggcattggttttactaatatggtagag
aggactacgcctgggagcaaagacctctcaaacaaagaaattcgagaaggaggcaaacaa
cttctggaaaagctacagaaatacaggcctcgaattgcagccttcaatgggaaatgtatt
tatgaaacattctgtaaagagattttcggagtgaaagctaagaacctggaatttggactg
cagccctacaaagttccagagacggaaacggtttgttacctgatgccatcgtctagtcca
cgctgtgctcagttccctcgagctcaggacaaagttcatttctatattaagctaaaggaa
ctcagggaccagctgaagggtgtggtgcagaacagggagattcaggagacagagtacaca
ttcgacttagtcttggccaaagaggatgccaaaagaatgtccatcaaagaagagcagcat
gaccctggctatgaggaaagctctaccagtgcaacactacagacgtgcagcttctatcct
gctaatgaacaaggtgctgcacattcagaaccttcattagctttgggacaggtcggatct
aaccagtggacgatgcagccatttgcagaccaaatcccagacattaggtactccagcaac
aatgagacgtcacaatatttctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (6)   
   RefSeq(nuc) (4)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (31)   

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