KEGG   Ictalurus punctatus (channel catfish): 108274549
Entry
108274549         CDS       T04658                                 
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
  KO
K16630  collagen type XXII alpha
Organism
ipu  Ictalurus punctatus (channel catfish)
SSDB
Motif
Pfam: Collagen VWA VWA_2 VWA_3
Other DBs
NCBI-GeneID: 108274549
NCBI-ProteinID: XP_053541751
Ensembl: ENSIPUG00000005154
UniProt: A0A9F7RQP5
Position
14:25947107..26022643
AA seq 1623 aa
MTAQFWCRILLILTVLALTLYSDGVKGQRAGCKNVHYDLAFILDTSSSVGKDNFEKIRQW
VANLVESFDVGEDKTRVAVVRYSDRPTTEFNLARYKTLDEVKMAARNIRYLGGNTKTGDA
IGYTTANIFNVQAGARPAARGIQKVAILLTDGRSQDYVLEPSVAASRAGIRMFAVGIGEA
LKEELEEIAAEPKNAHVFHVTDFDAIDRIRGRLRRRLCENVLCPNMKVQAERFKPNSTSA
GLQEVPGFDLMEYFNVRDVLGEKSDPGQSSYVRLGTMPIVQQTENVFSQGLPDEYAFVTT
FKFRKTSRREDWYLWQVYDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVFRSPDVEN
LFDRNWHKIGLSIHAKSVSLYLDCKLIQTLPIEDREDIDIQGKTVIGKRLYDSVPIDFDL
QRMVIYCDSKQAEQETCCDLPGGPCPKQVVTEPTPILLPTPTPTSGEQKSGEHTVNCSCT
TGERGETGLPGAQGPKGEKGDPGLQGTPGPQGPKGQKGELGKALSIKGDRGEKGDSGEHG
HPGVKGDKGERGSEGLPGLAGKKGDKGQQGETGSAGAPGLAGPLGPQGIQGDLGHPGAPG
PKGVPGDPGKKGEKGTAGERGLPGLDGFPGKHGSPGKDGLSGLIGAPGAHGVKGEKGERG
PAGIPGDVVHMGGLKGENGVPGPPGPPGADGPPGPPGPPGPTGQPGIPGEIGQRGKKGEA
GLPGVDGFPGPPGPAGPPGPPGSPGQTGLPGLPGEIGFPGKHGEAGKPGLPGKDGIDGQP
GNDGEKGPRGEPGLDGFPGKPGPKGDDGPPGPRGPPGDRGETGLPGEAGVMGPRGERGVQ
GERGKDGDVGAKGEKGDKGEAGPRGLPGTPGDVASVIPEPGEPGKPGEKGEKGEQGKQGE
VGPRGLPGEQGFRGQPGLPGVKGDIGSKGDPGTNGEPGPPGPPGLQGQRGLPGNVGIPGS
IGPPGIAGQRGEKGDPGKEGHAGPPGLPGEPGLRGEAGPPGRGKDGVKGDAGPPGMDGAP
GLKGPPGNPGMQGMPGNRGPPGEGTTGPAGPPGPPGLLGAVGPRGAPGVPGPQGPSGHNG
LPGRPGEKGAQGEPGKAADLSELDLKGVCSDCPAGPAGPPGIPGIPGEKGPAGPAGKNGQ
DGYQGAPGPVGPPGPPGAEGSKGVKGDRGSPGAAGDKGEKGPPGPPGYPGAAGTTGQPGN
DGNPGPPGAPGPPGEKGKEGLKGIQGPPGLPGLMGIMGKPGKDGRPGEVGEPGKQGEPGA
PGRDGLRGLPGFKGHRGEPGEPGSKGEEGKQGPPGREGPPGKDGIMGPSGPEGHRGPSGQ
PGKPGEPGPPGKSGPSGTPGPPGGKGETGNPGLPGFAGPKGPSGLPGPVGPEGKQGIPGK
QGERGYKGEKGDNGIKGDKGPTGEPGMPGNPGAPGRKGHTGMMGMSGPPGDMGTSGPPGA
PGQPGLPGQRGETPSLESIRRLIQEELAKELQAKMAYFMSQIQPTHIKSSAGRPGPPGPP
GKEGQPGRPGPPGESGMPGQNGAEGPRGPAGPKGERGARGEKGENGVGQRGEPGPSGPIG
PAGIPGDGKDGLPGATGAQGEPGHPGPHGQPGPSGPPGQCDPSQCAYYASLASRPHTKNV
KGT
NT seq 4872 nt   +upstreamnt  +downstreamnt
atgacggcacagttttggtgcaggatcctactgatcctgaccgttctggccttgaccttg
tacagtgatggggtcaagggtcagagggcaggttgtaagaatgtccactatgacctggcg
ttcatcctcgacacctcatccagtgttggcaaggacaactttgagaagatccgacagtgg
gttgccaacctggtggagtcgtttgacgttggtgaggataagactcgtgtggcagtagtg
cgctacagtgaccgtcccaccaccgagttcaacttggccaggtacaaaaccctcgatgag
gtcaaaatggcagccaggaacatccgatatctgggtggcaacaccaaaactggagacgct
atcggctacaccaccgccaacatcttcaacgtccaggcaggagccagacctgctgcccgg
ggcatccagaaagtggccattttgctaacagatgggcggagtcaggattacgttctggag
ccatccgttgcggcgtccagggctgggatcaggatgtttgcagtggggattggcgaggcg
ctgaaagaggagttggaggagattgcggctgagccaaaaaatgctcacgtcttccacgtg
acagattttgatgccattgacagaatccgaggcaggctcaggaggagactctgtgagaat
gtgctgtgcccgaacatgaaggtgcaagcagaacgattcaagcccaacagcacgagtgct
ggactacaggaagttccaggctttgacctgatggagtactttaatgtgagggatgttctg
ggggagaagtctgaccctggacagagctcctatgtgagactggggactatgcctatcgtc
cagcagactgaaaacgtgttttcacaaggcctcccagatgaatacgccttcgttaccacg
ttcaaattcagaaagacgtctaggagggaggactggtacctgtggcaggtctacgacaag
tacggcatccctcaggtttctatccgtctagatggagagaataaagcggtggagtacaac
gccgtgggcttgaccaaagacgcagtccgagccgtgttccgcagcccggatgtggaaaac
ctatttgacagaaactggcacaagatcggcctgagcatccacgccaaatccgtctcgctc
tatctggactgcaaactcatccagaccctaccgatcgaggacagagaggacatcgacatc
cagggcaaaaccgtcatcggcaagagactctacgacagcgtccccatcgacttcgacctt
cagaggatggtaatctactgcgactctaagcaggcagagcaggagacatgctgtgacctg
cctggaggcccttgccctaagcaggtggtcactgaacccacgcctattttactcccgacc
ccgactcctacgagcggagagcagaagagtggagaacacaccgtcaactgttcctgcacc
accggggagaggggtgagacaggtctgcccggtgctcaaggccctaagggtgaaaaggga
gatccgggccttcagggcactccgggaccacaaggacctaaagggcagaaaggagaactt
ggcaaggctctctctatcaaaggagatagaggcgagaagggggacagtggagagcacggt
catcctggggtcaaaggtgacaagggagagaggggatctgaaggcctcccgggacttgct
ggcaaaaagggagacaaaggacagcagggtgagacgggatctgctggagctccggggtta
gccggaccactcggaccacagggtattcaaggtgacctaggacaccctggagcacctggt
ccaaaaggcgttcctggtgatccgggtaaaaaaggagaaaagggaacagcaggagagagg
ggtctcccagggttagatggttttcccggcaaacatggatctcctggaaaagacggtctg
agcggtctgattggggcacctggagcacacggggttaaaggagaaaagggtgagagaggt
cctgctggaatacctggagatgtggtgcacatgggaggtctgaaaggagaaaatggcgtc
ccaggaccacccggtcctcctggagcagacgggcctcctggacctccggggccacctggt
ccaactggacagccaggaattccgggagaaatcggacaaaggggaaagaaaggagaagca
ggacttcctggcgttgatggatttcctggaccaccgggtcccgcaggcccccctggacct
cctgggagtccgggtcagactggacttcctggattaccgggggaaatcggattcccagga
aaacacggagaggccggaaaacctggtctgccagggaaggacggcatcgacggtcaacct
ggaaacgacggggagaaaggaccaagaggtgaaccggggctggatggcttccctggaaaa
cctggtccaaagggtgacgacggacctccgggacccaggggaccgccaggagacaggggt
gagacgggtcttcctggcgaggctggcgtaatgggaccgagaggagaaagaggagtgcag
ggtgaaagaggaaaagacggtgatgtcggcgcaaaaggcgagaaaggagacaagggtgaa
gctggacccagaggacttccaggaaccccaggagatgttgccagtgtgattcctgaacct
ggggaaccagggaaacctggagagaaaggcgagaaaggagagcagggaaaacaaggagag
gtgggtcccagaggacttcctggagaacaaggcttcagaggtcagcctggacttccggga
gttaaaggagacattgggtccaaaggagatccaggcacgaatggagaaccgggtcctcct
gggccgcccggccttcaggggcaacgaggactacctggcaacgtgggaattccgggcagt
atcggaccaccaggaatagcaggacagagaggagaaaagggagaccctggtaaagagggt
catgcaggcccccctggtttgcctggagagcctggtctcagaggtgaagcaggaccacca
gggagagggaaagatggggtgaagggggatgcaggacctccaggaatggatggagccccg
ggactgaagggcccaccaggaaatccaggaatgcaggggatgccaggaaacagaggtcct
ccaggagagggaaccactggaccagctggaccaccaggcccccctggactattaggagca
gtgggaccgagaggagcaccaggtgtaccgggacctcaaggaccttcaggacacaacggt
ttaccaggaagacctggagagaaaggagctcagggagagccgggtaaagctgcagatctg
tctgagctagacctgaagggtgtttgttcagactgtccagctggacctgctggaccacca
ggaatcccaggaattccaggagaaaaaggacctgcaggaccagcggggaaaaacggacag
gatggatatcagggtgcgcctggacctgtcggacccccaggaccacctggagctgaggga
agcaagggtgtgaaaggtgaccgaggctccccgggggctgctggagataaaggtgaaaag
ggacccccagggcctcctggttatccaggtgcagctggaacaacaggtcaacctggtaat
gacggcaaccctggaccccctggtgctcctggaccccctggagaaaagggcaaagaggga
ctgaaagggattcagggtcctccaggtctgccaggcttaatgggaatcatgggtaagcca
gggaaggacggacgaccaggggaagtgggcgagccgggtaaacagggagaacccggagca
ccaggaagagatggactcagaggtcttcctggttttaaaggtcacagaggagagcctggg
gaaccagggtcaaagggtgaagagggtaaacagggtccaccaggacgggagggtccacct
gggaaagacggcatcatgggaccttccgggcctgaaggtcacagaggaccaagtggacaa
ccgggtaaacctggagaacctggaccaccggggaaatcgggaccatctggaactccaggt
cctccaggagggaagggggagacaggaaacccgggactgcccggattcgcaggtccaaaa
ggaccatcgggtctacctggtcccgtcggccccgagggcaaacaaggcataccgggcaaa
cagggagaaagaggctacaagggagagaagggtgacaatggcataaaaggtgacaaaggc
cccacgggagaaccaggaatgcctggaaacccaggagctccaggcagaaagggtcacacg
ggcatgatgggaatgtcaggacctcctggagacatgggaacctctggacccccgggtgct
cctggccagcctggacttccaggacagaggggagaaactccatctctggaatcgatacgc
aggttaattcaagaggaactcgccaaagaactacaagccaagatggcctacttcatgtcc
cagattcagcccacacacataaagagctcggccgggcgtcctggtccacctggacctcca
ggaaaagaagggcaacctggacgaccaggtccacctggagagtctggtatgcctggccaa
aatggagcagagggaccccgaggtccagcaggtcctaaaggtgaaagaggtgccagaggg
gagaagggagaaaatggtgttggacagagaggagagcctggtccatctggtcccattggt
ccagcaggaattcctggagacggtaaagacggtcttccgggagcaactggagctcagggt
gaacctggacatccaggtcctcatggacaacctggcccatcgggacctccggggcagtgt
gacccctctcagtgtgcctactacgccagcctggcatcacgacctcacactaagaacgtc
aagggaacctaa

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (66)   
   KEGG ORTHOLOGY (1)   
   RefGene (61)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (76)   

Download RDF
DBGET integrated database retrieval system