KEGG   Ictalurus punctatus (channel catfish): 108277160
Entry
108277160         CDS       T04658                                 
Symbol
kdm6bb
Name
(RefSeq) lysine (K)-specific demethylase 6B, b isoform X1
  KO
K11448  lysine-specific demethylase 6B [EC:1.14.11.68]
Organism
ipu  Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ipu03036]
    108277160 (kdm6bb)
Enzymes [BR:ipu01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.68  [histone H3]-trimethyl-L-lysine27 demethylase
     108277160 (kdm6bb)
Chromosome and associated proteins [BR:ipu03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    108277160 (kdm6bb)
SSDB
Motif
Pfam: JmjC KDM6_C-hel KDM6_GATAL
Other DBs
NCBI-GeneID: 108277160
NCBI-ProteinID: XP_017345110
Ensembl: ENSIPUG00000019157
UniProt: A0A2D0SS27
Position
16:4553950..4571822
AA seq 1670 aa
MYHTEHQYSGRYSWDSFPSGGSSRASWTPGSSRHFPPPSRSSGGGYQSTLNHASGRNYHK
AYNNRPPEFSRHRVHDHPRERGPNSRDRVTSWSWGLNQHQNPDRAAMNGYSSGCGGRVPS
NQPPRYGGPHQQHRTPMADRWSPVASSRSFQSPSLKRPGPRNPSPSRDDCPSKRSKSVSS
HQQALPSKMKHPMPMNHPSLSHLPHTCSPPYRSDAQWNQSNKRQSASGFQDSSQSNSRDH
LHRIYPMFSSTLGGPGQDFHNSKSHHSYSHQTYDHLGPHGTKGDWECCVPSSPANLTRVP
YSPQHQPPAGPHRHPVPHASRGSPTPAWKDKQSSETRRSGLGPEERQQLQGLKEGGRHHS
TPKHTQLRCSPEGRSVRHGTTCGRASLSPSPQPRFSSQRLEGKKIRVSKHRAPSNYTKPS
YSNHGGQESPIRRLDTDMLKHVETKKRHRERERRQERKGEEGADERKARILRKLEAKKKK
KERQEKRRHRERKGSHRKGETDGQSERKTKDERKRARKAERNGMKRGEKDHLRRVMSPQT
PSCDSLGKSPDSAILESPPMAAPSDTSLCIQKYTKHEEEEESNCDSDSSHTSGFISPSTP
PPANQNHPLRCQSKDIANTITSESDNSLPSSEPTSPNTSSFGTQDKQLHQEDITSEPPAS
NEQELPMLVRSSCLEVKVPQPEEKNQHAPDLLPAHSNSMEDHLRLDPSASPPVLSWQGSP
VSDISEEEEDVAGANIDGVIRRPVLQPSPTHSSPIRGLEEIWKEPGHSLGLDYCHSDLAK
LYGIAEPSDVVEEEEDKEPMEEQQDSSTTISQGPHLHDTDGTLASDSHKYTYRGGPFGWP
PPNTMTGVKYSSSLSLGPEIHPPEQHSPPSTSPRAVSPVAVPLTSLSPSISTSDLSNPDT
NMQANEEKKECRVVQNESDDLIDDVQSLKESICTSILKEDEVKVLPSTLFPATLQAKLAH
SCEVLLKQSSSTLRPSEVNSGKEKSKTKLQKKKRGQGRDRKREQQKNQKTKSDSSGITEE
PRTREGRHKKQKRNTKSGKQHCSSSGEPVKQLAKVCNKQEVAERKPTETEKDQRKGDKEI
VNAKEENKDGDAGMTKTTSSSGSDSSTAPAVQVLSSVPLKVLKIQLVKLKISGRRTFTAS
EFEAKRILLKEITINNSAEDIIRACKDAKVRGRFRESYLLPSLSVKPVLNVTSQIPREKL
NPPTPSIYLESKRDAFSPVLLQFCTDPKNPVTVIRGLAGSLRLNLGLFSTKSLVEANAEH
AVEVRTQVQQPADENWNTTGSAQTWPCESSRSHTTISKYAQYQASSFQESLQEEKDSEDE
DEGEGKEESKSDTPASNPSCTQSSEQKSVGKIIKFGTNIDLSDPKRWKSQLQELLKLPVF
MRVSSTENMLSHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFAV
HEHYWEAISHFCEKNGVDYLTGSWWPVLDDLYRSNIPVYRFIQRPGDLVWINAGTVHWVQ
AVGWCNNIAWNVGPLNSYQYQLALERFEWNEVKKVKSIVPMIHVSWNVARTIKITDPNTY
KMIRHCLLQSIKHIQILREQLVEEGKKICYQSRVKDEPAYYCNDCDVEVYNLLFVTSENS
SRKTYVVHCEDCARRRNSTLSGVVVLEQYRVEELMSTYDNFTLAPVPCSK
NT seq 5013 nt   +upstreamnt  +downstreamnt
atgtatcacacagagcaccagtattctggccggtactcatgggactccttcccctctggc
ggttccagcagggcttcatggactcccggctccagccgccactttccccctccatccagg
agcagtggtggagggtaccagtcaaccctgaaccatgcgtcaggaaggaactatcacaaa
gcttataacaacagacctccggagttcagcaggcacagagttcatgatcaccccagagag
agggggccaaacagtagagatcgggtcacgtcatggtcttggggtttgaatcagcaccag
aaccctgaccgggccgctatgaatggatacagctcaggatgtggaggacgtgttcccagt
aatcagcctccaaggtatggaggccctcaccagcagcaccggactccaatggcagacaga
tggagtccggtggcctcgtccagatcctttcaaagtccctcacttaaacgtccaggcccc
cgaaacccctcaccatcgagagatgactgtccgagcaagaggagcaaaagcgtcagctca
caccagcaggctcttccctccaaaatgaagcaccctatgcctatgaatcacccttccttg
tctcatctccctcacacttgtagccctccataccgcagtgatgcccagtggaatcagtca
aataagagacagtctgcttcaggctttcaggattctagtcagtccaacagcagagatcac
ctacacaggatctatccaatgttctcgtctacacttggtggccctggccaagatttccac
aactcaaagtcccatcactcttacagccaccaaacctatgatcacctgggaccccatgga
accaaaggggactgggagtgttgtgttccgtcctcaccagcaaacctcaccagagtgcct
tatagcccccagcatcagcctccagcgggcccacacaggcatccagtacctcatgccagc
cgtggttcacccacgccagcctggaaggacaagcagagcagtgaaaccaggcgctctggt
ctagggcctgaagagcggcagcaactgcaagggttgaaagagggaggacggcatcacagc
actccaaaacacacccagctccgttgcagccctgaaggcagaagtgtgcgacatggcacc
acctgcgggagagcaagcctgtccccaagcccacaacctaggttcagctctcagaggcta
gaggggaagaaaatcagggtttctaaacaccgggctccatcgaattacactaagcccagc
tactctaaccatggtggccaggagagcccaattcgtcggctggacacagacatgttaaag
catgttgaaaccaagaagaggcacagagagcgagagagaagacaagagaggaaaggggag
gagggggcggatgaacgaaaggcgaggatactaagaaaactggaggcaaagaaaaagaaa
aaggagaggcaagagaaaaggcgtcaccgggaaaggaaaggaagccatagaaaaggagag
acagatggacagtctgagagaaaaacaaaagatgagaggaaaagagcaaggaaagcagag
agaaatggcatgaagagaggggagaaggaccatttaagaagagtaatgtctccccagact
ccttcttgtgactcactgggtaaaagtccagactctgccatccttgagtctccgccaatg
gcagctccttcagacacatcactgtgtattcaaaaatacacaaaacatgaagaagaggag
gagtccaactgtgactctgactcttcacacacctcagggttcatttcgccctccactccc
cctccagcaaatcagaaccatccgcttcggtgtcaatcaaaggacattgccaataccata
acctcagaaagtgacaacagcctgccatcctctgagcctacaagtccaaacaccagcagt
tttgggactcaagacaagcagcttcaccaggaggacattacctctgaaccacctgctagc
aatgagcaggagttgccaatgttggttcgctccagttgtttagaggtaaaagttcctcag
cctgaggaaaagaaccaacatgctccagacctgctacctgcccacagcaattctatggag
gaccatctgagactggatccctcagctagtcccccagtactgagctggcagggctcccct
gtttcagatatcagtgaggaagaggaggatgtagcaggggccaacatagatggagtgatc
aggagaccagtcctccagccaagccccactcattcttctccaatccgaggcctagaggaa
atctggaaagaaccaggtcattccttaggtctggactactgccacagtgacctggccaaa
ctgtatggcattgctgagccttcagatgttgtggaggaagaagaagacaaagaacctatg
gaagagcagcaggacagtagcacaacaatctctcagggaccgcatctgcatgacactgat
ggtaccttggcctcagacagccataaatacacctacagaggtggcccctttggctggcca
cctcccaacacaatgactggggtcaaatactcttcctcactctcactgggaccagagata
caccctccagagcagcacagtccgccatccacatccccaagagctgtgtctccagttgcc
gtgcccttgaccagcctttccccttccatatctacctcagatctttcaaatcctgacacc
aacatgcaggcaaatgaagagaaaaaagagtgcagagttgttcagaatgaaagcgatgac
ctgatcgacgatgtacaatcattaaaagaatcaatctgtacctctatactgaaggaggat
gaggtcaaggtgttgccgtccaccttgtttcctgctaccttgcaggctaaactggcacac
agctgtgaggtgctgctgaagcagagctccagtaccctccgtccgtcagaagtgaacagt
ggaaaggaaaaatctaaaaccaagctacagaagaagaagcgagggcaaggcagggacaga
aagagagagcagcagaagaatcagaaaacaaaatctgacagcagcggtataacagaagag
ccaagaaccagagagggaagacataaaaagcagaaaaggaacaccaaaagtggaaaacag
cattgctcgtctagtggtgaacctgtcaaacaacttgccaaggtctgcaacaaacaagag
gtagcagagaggaaaccgacggagacggagaaggatcaaaggaaaggggataaggagata
gtcaatgctaaagaggagaacaaggatggagatgcaggaatgacaaaaacaacctcctcc
agcggaagtgactccagtacagctccagctgttcaggttctgtcctctgtgccactgaaa
gtgctaaagattcagctggtgaagctcaagatcagtgggaggcgaaccttcactgcctca
gagttcgaggcaaagaggatcctgctgaaagagattaccatcaacaacagtgcagaagat
atcattagagcctgcaaagatgcgaaggtgcgaggtcgtttccgtgagtcctatctgctt
ccttcattgtctgtgaagcccgtgctgaacgtcacgtctcagattcctcgagagaagctc
aacccgcccacgcccagcatatacctcgaaagtaagagagatgcattttctccggtgctg
ctccagttctgcacagatcccaaaaacccggtcactgttatccgaggcctggcaggatca
ctccgactcaacctgggtttgttctccactaagtctctggtggaggcgaatgctgaacat
gccgtggaggtgaggactcaggtgcagcagccagctgacgagaactggaacacgaccggc
tcggctcagacgtggccatgcgagagcagccgatctcacaccaccatctccaagtatgct
cagtaccaggcctccagcttccaagagagcctacaggaagagaaggacagcgaggatgaa
gatgaaggagagggaaaagaagaatcaaagtcagacactccagccagtaacccttcctgc
acacagagctcagagcagaagtccgtcggcaaaatcatcaagtttggtaccaacatcgat
ctttctgacccaaagaggtggaagtcgcagctgcaggagttgttgaagttgcccgtgttc
atgcgtgtttcatccacggagaacatgctaagccacgtgggacacaccatactcggcatg
aacaccgtccagctgtacatgaaggtcccgggcagccgtacaccaggacaccaggagaac
aacaacttctgttcggtgaacattaatatcggccccggagactgcgagtggtttgctgta
catgaacactactgggaggccatcagccacttctgcgagaagaacggagtggactatctg
acgggttcatggtggccggtgctcgatgatctatatcgttccaacatccctgtgtaccgt
tttatccagcgtcccggagatttagtgtggattaatgcagggaccgtgcactgggttcag
gccgtcggctggtgcaacaacatcgcctggaacgtcgggccgctaaactcctatcagtat
cagctggctctggagcgctttgagtggaatgaagtcaaaaaggtcaaatcgattgttccc
atgattcacgtctcctggaacgtcgcccgtacaatcaagatcaccgacccaaacacttac
aaaatgatcagacattgcctcctgcagtccataaaacacatccagatcctgagagagcag
ctcgtggaggaagggaagaagatctgttaccagagccgagtgaaggacgagccggcctac
tactgcaacgattgtgatgtggaggtgtataacctgctcttcgtcaccagcgagaacagc
agtaggaagacatacgtggtgcactgcgaggactgcgctcgtcggaggaactccaccctc
agcggagttgttgtgcttgaacagtacagagtggaggaactgatgagcacctacgataac
ttcaccctggctccggtgccgtgttcaaaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (96)   
   KEGG ORTHOLOGY (1)   
   RefGene (91)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (115)   

Download RDF
DBGET integrated database retrieval system