KEGG   Ictalurus punctatus (channel catfish): 108277374
Entry
108277374         CDS       T04658                                 
Name
(RefSeq) ATP-dependent RNA helicase DDX55
  KO
K14809  ATP-dependent RNA helicase DDX55/SPB4 [EC:5.6.2.7]
Organism
ipu  Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ipu03009]
    108277374
Enzymes [BR:ipu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     108277374
Ribosome biogenesis [BR:ipu03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    108277374
SSDB
Motif
Pfam: DEAD Helicase_C DUF4217 ResIII Helicase_C_2 SBF_like TFIIF_alpha
Other DBs
NCBI-GeneID: 108277374
NCBI-ProteinID: XP_017345539
Ensembl: ENSIPUG00000014551
UniProt: A0A2D0SS64
Position
16:6833586..6846978
AA seq 607 aa
MKRSNMESISDGKWASLPVKLHDSIHLTLKKLGFIYMTPVQSACIPLFMSNKDVAAEAVT
GSGKTLAFVIPLLEILTKREEKLKKMQVGALIITPTRELALQISEVVGQFLEEFPQFRQI
LLIGGSNPIEDVEKFKTSGANIVIGTPGRLEDMFRRKADGLDLASCVKSLDVLVLDEADR
LLDMGFEASLNTILGYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAATSM
QKTPSRLSNYYTICRTEDKFNTLVAFLRQHKHEKQLVFFSTCACVEYFGRALEVFIKNVT
ILCIHGKMKDKRSKIFSEFRELKSGILVCTDVMARGIDIPDVNWVLQYDPPSSASSFVHR
CGRTARIGNRGNALVFLLPMEESYISFLSINQKCPLQKYPPVKDVVDVLPKLKSLALGDR
AVFERGVKAFVSFVQAYAKHECSLIFRLKDLNFAALARGFALLRLPKMPELRGKTFPDFE
EITDTDSIRFKDKNREKHRQKSLQEKKEKQKQALAQKKNFIKNKAWSKQKSKKDKRRKVA
AKRKMNEGSDVDDEDIDELLSDTRLLKKLKKGKISEEDFDKQMSTERNSKHNRAGPSHED
GAEGGSE
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgaaacgcagcaatatggagagtataagcgatggaaagtgggctagtttacccgtgaaa
cttcacgacagcatacatttgaccttgaagaagctggggtttatttatatgactccggtt
cagtcagcatgcatccctcttttcatgagcaataaagatgttgcagccgaagcggtcaca
ggcagtgggaagactcttgcttttgtcattcctctgctagaaatcctcacgaaacgcgag
gagaagctgaagaaaatgcaagtcggcgctttgatcatcacaccgacccgagagctggca
ctccagatcagtgaagttgtgggccagtttcttgaggaatttcctcagttcaggcagatt
cttttaattggtggaagcaaccccattgaagatgtagaaaagttcaagaccagtggagcc
aacatcgtgattggaacccctgggaggctggaagacatgttcaggaggaaagctgatggc
ctcgacttggccagctgtgtgaagtctttagacgtgcttgttctagatgaagccgacaga
ctgctggacatgggctttgaagctagcctgaacactattttgggctatttgcccaagcag
aggcgcacagggcttttctcagcaacacagactcaggagctggagaagctggtgagggct
ggcctccgaaacccggtccggatcacggtgaaggagaaaggagtggcagctacaagcatg
cagaagactccatcgaggcttagtaattactacacaatctgtagaacagaagacaagttt
aacacgctggtggctttcctgagacagcacaaacatgagaagcagcttgtgttcttcagc
acatgcgcctgtgtggagtattttggaagagcgctggaggtctttatcaaaaacgtcacc
attctttgtatccatggtaagatgaaggacaagaggagcaagatcttctccgagtttcgg
gaattaaagagcgggatactcgtgtgcactgatgtgatggcaagaggcatcgacatcccg
gatgtgaactgggtgctacagtatgatcctccaagcagcgcaagttcttttgtgcatcga
tgtggccgaaccgctcgtatcggaaaccgaggcaatgctctagtctttctcctgccaatg
gaggaatcttacatcagttttctgtctatcaatcaaaaatgtcccctccagaagtatcct
cctgtgaaggacgttgtggacgtgttgcccaaactgaaatctcttgctcttggggacagg
gctgtatttgagagaggagtgaaggcgtttgtctcatttgtccaggcttatgcaaagcac
gagtgcagcctgatattccgactcaaagatctgaactttgccgctttagctcgaggcttc
gctcttcttcgtttgcccaagatgcccgagttgaggggcaagacattccccgacttcgaa
gagatcacggacacagactcgatccgtttcaaggacaagaaccgagagaaacatcggcag
aaatcgttacaggagaaaaaggaaaagcaaaagcaggcactggcccaaaaaaagaacttc
ataaagaacaaagcctggtccaagcagaaatccaagaaggataagaggaggaaggtggct
gccaaaaggaagatgaatgagggatcagacgtggatgatgaggacattgacgagcttttg
agcgacacacgtctactgaagaagctcaagaagggaaagattagcgaggaagactttgat
aagcaaatgagtacagaaagaaattcaaagcataacagagcaggtccctctcatgaggac
ggcgcagaaggagggagtgaatga

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (38)   

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