KEGG   Ictalurus punctatus (channel catfish): 108278344
Entry
108278344         CDS       T04658                                 
Name
(RefSeq) Fanconi anemia group J protein isoform X1
  KO
K15362  fanconi anemia group J protein [EC:5.6.2.3]
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03440  Homologous recombination
ipu03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    108278344
   03460 Fanconi anemia pathway
    108278344
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ipu03400]
    108278344
Enzymes [BR:ipu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     108278344
DNA repair and recombination proteins [BR:ipu03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-B complex
     108278344
   FA (Fanconi anemia) pathway
    Downstream FA components
     108278344
SSDB
Motif
Pfam: DEAD_2 Helicase_C_2 DEAD
Other DBs
NCBI-GeneID: 108278344
NCBI-ProteinID: XP_017347144
Ensembl: ENSIPUG00000003927
UniProt: A0A2D0SWT2
Position
17:12186648..12251871
AA seq 1632 aa
MCLQSACLAHTLSMAADTVEYTIGGVKINFPCKAYPSQLAMMNSIVRGLNHGQHCLLESP
TGSGKSLALLCSALAWQQAQYAKSDQEGGSPSCDVKKPFVTTPCQCVCHNRARCSSTSFG
TTASPPTVIDLTGENTAAQVITPPRADENQAKRSTLSSRLSEKFQASLNTQGEPSDEDFK
PDKKRIRAPAADQKQSRKRRCFEKGVVFDEEEEEVERANPGAENWTVGLSRQAKPEGSLP
PAECCSPVPCSLCACASLAEGQRTGEKVKDKDKENNGKKAVPKIFFGTRTHKQITQIARE
LKRTLYSTVPMTILSSRDHTCVHPEVVPHANRNERCKELLKAKNGQSCRFYHNVHKMREQ
RSLQWVHGLHQAWDIEELVSLGNKLRSCAYYAARELMQDACIVFCPYNYLLDPLIRESMD
INLKGQIVVLDEAHNIEDCARESASYTINQAQLREAREDLEAMVTYNIRRNHHEPLLAFC
CSLLNWIQESSSILQDRDYESAYKVWTGKEVLDIFHGLGITADTFPVLQKHFEAVLEKEE
RVGLVNGREDTVEVPTISSNTQTVLKSLFMVLGFLFRQNCRFADDYRVALQQSYVWTTQE
DVPDAQGFFARPRRRRQAVRTKTLVHTLSFWCLNPAVAFSDLSTVVHSIVLTSGTLSPMT
SFSSELGLKFSIQLEASHVISKSQVWVGTIGAGPQGRRLCATFQHAETFTFQDEVGALLL
KVCQTVSRGVLCFLPSYKMLDKLRDRWMNTGLWEKLEERKAVIAEPRGGAKSDFDELLQT
YYNAIRQSGARDGALLIAVCRGKVSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMKYN
DQHCKSRGLLPGGRWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRANPNKYITGLS
KWVRQLVKHHDSFTSAMQSLGSFSQSQQEQVESHTEQLSQTTHESPRTRSSALQSLPELP
KLHQCLSSDGQITVPLVNPSEAGDQKPSQLQSESLIPQCNVPKILPKQQTIPTIFTSTPV
SSRFRTPIFQSKDSRKDPDQCVNSAVINKDTASAPDQAVKDQTEVVPENKPNEIPPDPPL
QPLALSPVETPPYCISNQETSVAAPEDAEEEDQSLFYTPELFEGEDEESAAAARAEDERS
AMAATEETPLKMEQLLCPIGKMADGQTEELFRSEMGQTRTCAGSSDVKGASVCPDRDNVS
PNRDCVLSESVAEQAGVSCCISSEDRATQQQHSSSSSKSRSLSRSRQKASNREAGHSAVE
RKKEKVCKHRKRGSSQAVSQSSKRSIQTPTLPLVQDIRAQGKDAVTTMSQVAMVLKAESI
EDSECQSSAKTMQTSVFCMQYSNPKAKSTALTVRRTTRRAATKRMSCTKPTAKDCHEVTS
EGQSAVSFEMVTPEPQSRKSQRHLAVSNERNSSPHQTGEVSDASVVYQKGIRVQRSCVRK
SRKINMVVNDKLSKIKLEKRQKQFSSGSPCMKGLHCGFCQSELLPFVQGVVQTALCKQVE
VSELVASLEQSSERPQCPCGPLRATQFNGNSLLMVQNSLALQTLRCSLQPYMPENKKGLC
LYNAIWNKAKCSVTQLLQCQTCVSDHADCAVIMAAEVQHPKDPDLDQIWLVPSALRFCSR
IRTLGPVQGSQQ
NT seq 4899 nt   +upstreamnt  +downstreamnt
atgtgtttacagagtgcatgtctcgcacacacactcagcatggctgcggatacagtagag
tacaccataggaggagtgaagataaacttcccctgcaaagcatatccctctcaacttgcc
atgatgaactctattgtccgtggcctgaaccatgggcaacactgcttattggaaagccct
actggcagtgggaagagcctcgcgctgctctgctcagccttggcatggcagcaggcacag
tatgctaagtcagaccaggagggaggaagcccatcatgtgatgtgaaaaagccattcgtt
actaccccatgtcagtgtgtgtgccacaacagagctcgttgctcatctacttcctttggc
actacagcgtccccaccaactgtgattgaccttactggagaaaatactgctgcacaagtc
atcacacctccgagagcggacgaaaatcaagccaagagatccactctgtcatccaggctt
tctgagaaatttcaggcttccctcaatacacagggagaaccaagtgatgaagactttaag
cctgataagaagcgcattcgggcacctgctgctgatcagaagcaaagcaggaagcgaaga
tgttttgaaaaaggtgtggtgtttgatgaggaggaggaggaagttgaaagggctaatcct
ggggctgagaactggactgtagggttgagcaggcaagccaaacctgaaggcagcctgcca
cctgctgaatgctgttctccagtaccttgttccctgtgtgcttgtgcaagcctcgcagaa
gggcagaggacaggtgaaaaagtcaaggacaaagacaaggaaaataatgggaagaaagct
gtccccaaaattttctttggcacacgtacgcataaacagatcacccaaattgcacgagag
ctgaagcggacgctgtactccactgtgcccatgaccatcctgtccagccgagaccatacg
tgtgtccaccctgaagtggtaccccacgccaaccgcaatgaacgctgcaaggagctactc
aaggccaagaatggccagtcatgccgattctaccacaatgtgcataagatgcgggagcag
aggtctttgcagtgggtgcatgggctgcaccaagcctgggacatagaagagcttgtcagt
ctgggcaataagctacgctcctgtgcctactatgcagcccgggaactcatgcaggatgct
tgcattgttttttgcccgtacaactacttgctggacccccttatccgggagagtatggac
atcaatctaaaggggcagattgtggtgctggatgaggctcataacattgaggattgcgcc
cgcgagtctgccagctacaccataaaccaggctcagctgcgggaggcccgtgaggatctt
gaggccatggtgacatataacatccgccggaatcaccatgagcctcttctggccttttgc
tgcagcctgctcaactggatacaagaaagctccagtattttgcaagacagggactatgag
tctgcctataaggtgtggactgggaaggaagttctggacatcttccatggtcttggcata
acagctgacacatttcctgtgcttcagaagcattttgaggcagtgctggagaaggaagaa
cgggtcgggctggtgaatgggagagaggacacggtagaggttcccaccatcagctccaac
actcagactgtgctcaagagcctttttatggtgttgggatttctgtttagacaaaactgc
aggtttgcagatgattaccgtgtggctctgcagcagagttatgtttggactacccaggag
gatgtgcctgatgcccagggcttttttgcccggccacgccgtcgccgccaggctgtgcgc
actaaaacccttgtgcataccctcagcttctggtgtcttaatcctgctgtggcattctct
gatctgagcacagtagtacacagtatagtgctcacttctggtaccctctcacccatgacg
tccttctcttctgagctgggcctcaaattctctatccagctggaggccagccatgtcatc
agcaaatctcaggtatgggttggcactattggagccggtcctcagggtcgaaggctatgc
gccacattccagcatgccgagaccttcaccttccaggatgaggtgggtgcactgcttctg
aaagtgtgccagacggtgagccgaggcgttctctgcttcctgccatcctacaagatgctg
gataagctgagggatcgctggatgaacacaggcttgtgggagaagctggaggaacggaaa
gcagtgattgcagagccacgtggaggagccaagagtgactttgatgagctgctacaaacg
tactacaatgccatcagacaaagtggagcccgagatggggcacttctgattgcagtttgc
agagggaaagtgagtgagggactggattttactgacgacaatgccagagcagtggtcaca
attggcattcccttccccaacatcaaagacttgcaggttgaattgaagatgaaatacaat
gaccagcactgtaaatccagaggccttcttcctggaggccgatggtatgagatccaggct
taccgggccctaaatcaggctttgggaaggtgtattcggcatagaaatgactggggtgca
cttattttagtggacgaccgttttagagccaaccccaacaagtatatcacaggcctgtcc
aagtgggtgcgtcagctggtgaagcatcatgacagctttactagcgccatgcagtctttg
gggtccttctcccagagccagcaagaacaagtagagagccacactgagcagctttctcag
actacccacgagtcccccaggactcggtcatctgctctacagtcccttcctgagcttcca
aaactccaccaatgcctgagctctgatggtcagattaccgttcctctcgtcaacccttcg
gaagcaggtgaccagaagccttcacagcttcaatcagaatcactaattcctcagtgtaat
gtgcctaaaatcctgccaaaacaacaaacgatacccaccattttcacttccactccagtc
agttctcgtttcaggacccctatcttccaatctaaagactccaggaaggacccggaccag
tgtgtaaattcagcagtcattaataaggacaccgcttctgcacctgatcaggcagtgaaa
gatcagactgaagttgttcctgagaacaaaccgaatgagattccacctgaccctcctctt
cagcctctagctctgtcccctgttgagacacccccatactgtatttccaatcaggaaaca
agtgtagcagcacccgaagatgctgaagaggaggaccagagtctcttctacaccccagag
ctgtttgaaggagaagatgaggagtcagctgcagcagctagagcggaagatgagaggtca
gctatggcagctacagaggaaactcctcttaagatggaacagcttctttgccccatcgga
aagatggctgatggacagactgaggagttgttcaggtctgagatgggccaaacgaggacc
tgtgctggctctagtgatgttaaaggagcttctgtgtgtcctgatagagacaatgtttct
cctaacagagactgtgtattgtctgagagtgtagcagagcaagcaggggtgagttgctgt
ataagcagtgaggacagggccacacaacaacaacacagcagcagcagcagcaagtcacgt
agcctctccaggtccaggcagaaagcatcaaacagagaagcaggtcacagtgcagtggag
aggaagaaagagaaagtttgcaaacacagaaagcgagggagtagtcaggcagtttcacaa
tcttcaaaaagatcaatccagactcccactttacccctggtccaggacattagagctcaa
ggcaaggatgcagttaccacaatgtcccaagtagcaatggtgctgaaagcagagagtata
gaggattctgaatgtcaaagcagcgccaagaccatgcagacctcagttttctgtatgcag
tacagtaatcctaaagcaaagagtacagcactgacagtgaggagaacaacaaggagagca
gcaacaaagcgcatgagctgtactaaacccacagcaaaggactgtcatgaggtcacttct
gagggtcagtctgcagtgagttttgaaatggtcactccagagccacagagtagaaaaagt
cagagacatttggctgtatctaatgagaggaacagttctcctcatcaaacaggagaagtg
agtgatgcctcagttgtttaccagaaagggatcagagttcaaaggtcatgtgtaaggaaa
agcaggaagatcaatatggtggtaaatgataaattatctaaaatcaagcttgaaaaaaga
cagaagcaattttccagtggttcaccatgtatgaaaggacttcactgtggtttttgccag
tcagagctccttccctttgttcaaggtgtggtacagactgcactgtgtaaacaagtagaa
gtgtctgagttagtggcgagcttggagcagtcgagtgagagaccacaatgtccgtgcggt
cccttaagagccactcagtttaatggcaattccctactaatggtccaaaacagcttagct
ttacagaccctgcgctgttcacttcagccatacatgcctgagaataaaaaaggcttgtgc
ttgtataatgcaatatggaacaaggccaagtgttcagtgacccagctgctgcagtgtcag
acttgtgtgtctgaccacgctgattgtgccgttatcatggcagcagaggttcagcaccct
aaggaccctgatcttgaccagatctggttggttccatcagcactgcggttctgctctagg
atcaggactcttgggcctgttcaagggagtcagcagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (49)   
   KEGG ORTHOLOGY (1)   
   RefGene (44)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (3)   
   Pfam (3)   
All databases (68)   

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