KEGG   Ictalurus punctatus (channel catfish): 108279375
Entry
108279375         CDS       T04658                                 
Name
(RefSeq) DNA polymerase delta subunit 3 isoform X1
  KO
K03504  DNA polymerase delta subunit 3
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03030  DNA replication
ipu03410  Base excision repair
ipu03420  Nucleotide excision repair
ipu03430  Mismatch repair
ipu03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    108279375
   03410 Base excision repair
    108279375
   03420 Nucleotide excision repair
    108279375
   03430 Mismatch repair
    108279375
   03440 Homologous recombination
    108279375
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ipu01009]
    108279375
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ipu03032]
    108279375
   03400 DNA repair and recombination proteins [BR:ipu03400]
    108279375
Protein phosphatases and associated proteins [BR:ipu01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     108279375
DNA replication proteins [BR:ipu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    108279375
DNA repair and recombination proteins [BR:ipu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      108279375
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     108279375
SSDB
Motif
Pfam: CDC27
Other DBs
NCBI-GeneID: 108279375
NCBI-ProteinID: XP_017349085
Ensembl: ENSIPUG00000002408
UniProt: A0A2D0T3B1
Position
18:complement(18620401..18630078)
AA seq 471 aa
MQRRVCFQGDQRCAAMDELYLDNIDEYVNDQNKIVTYKWLSLTLGVHVNTAKQMLYHYIE
QRRKERSGNTLHATYLVSGKCLENGNMCHKVSVVREDKLEDVKSKLDVTISVHVYSVQKA
ELKDSAPLYSTDYDAMKENLKNCNKYSAIRCAAAVPISTAELQRAQEMVMSTATDKEANK
PVVNNYTAPASKPTSKQPKGIMGMFANKAAPKSEEQSREVKMEQADDPSPAEGQKTKLSS
KASAMNNFFGKSADKKLDKADKNVKEKADGGPTSSLAGSTKQSCSSSKPKQNIKEELPKV
DEVIKDDAKETRSKTKRLEHLHSEDERVEIQKKKRRRIKDSQPDSSDDEVIPDSPPAPEL
QIPSPEKHVKKEPVLHSSEGRRRKRRRVLKSRTFMDDEGCIVTEKGYESESYSESEDESK
AQPSEDSSSVKQPLSRLDEEKKVKEKSQKKAPSATNKTTKQASITGFFQKK
NT seq 1416 nt   +upstreamnt  +downstreamnt
atgcagcgaagagtgtgtttccagggtgatcaacgttgcgccgccatggatgagctttat
ttagacaacattgacgaatatgttaacgatcagaataaaattgtcacctataaatggctg
agtcttactcttggtgtccatgttaacacagctaaacaaatgctgtatcactacatagag
cagcgacggaaggagcggtctggaaacactctgcatgcaacttacttagtctctgggaag
tgcttggagaacggcaacatgtgtcataaggtgtcagtagtgcgtgaagacaagcttgag
gatgtaaaatccaagctggatgtgacgattagcgtgcatgtgtacagtgttcagaaagct
gagctgaaggacagtgcaccgctatacagtactgactacgatgctatgaaagagaacctt
aaaaactgcaacaagtacagtgcaattcgctgtgccgctgctgtaccgatatccacagca
gagttacagagggctcaagaaatggtcatgtctactgcaactgacaaagaggccaataaa
cctgttgtcaacaactacacagcacctgcatccaaacctacctccaaacagccaaaaggc
atcatggggatgttcgcaaataaagcagctcctaaaagtgaagagcagagcagagaggtg
aagatggagcaggctgatgatccatctcctgctgaaggacagaaaacaaagttgtcttcc
aaagctagcgctatgaacaatttttttgggaaatcagcagacaaaaagcttgacaaagca
gacaaaaacgtaaaagaaaaggcagatgggggtccaacgtcatcacttgcagggagcaca
aaacagtcttgcagttcatccaaacctaagcagaacataaaggaggaattaccgaaggta
gatgaagtgattaaagatgatgccaaagagacccggagtaaaacgaagcgtctagagcat
ttgcacagtgaagatgaacgagtggagattcagaagaaaaagagacggaggataaaagat
tctcagcctgacagcagtgatgatgaggtaattccagattctccacctgcacctgaactg
cagataccaagtcctgaaaagcatgtgaaaaaggagcctgttttacatagctctgagggc
aggaggaggaagaggagacgggtattaaagtcccggacatttatggacgatgaaggctgt
attgtgacagagaaaggctacgagagtgaatcttactctgagagtgaagacgaatccaag
gctcaaccttctgaggattcaagctcagtcaagcagccactctcaaggttggatgaggag
aaaaaggtcaaagagaaaagtcagaagaaggctccttctgctacaaataaaacaacaaaa
caggcatctatcacaggctttttccagaagaaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (37)   

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