KEGG   Ictalurus punctatus (channel catfish): 108279924
Entry
108279924         CDS       T04658                                 
Name
(RefSeq) nuclear pore complex protein Nup50 isoform X1
  KO
K14295  nuclear pore complex protein Nup50
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    108279924
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ipu03019]
    108279924
Messenger RNA biogenesis [BR:ipu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     108279924
SSDB
Motif
Pfam: NUP50 Ran_BP1
Other DBs
NCBI-GeneID: 108279924
NCBI-ProteinID: XP_017350059
Ensembl: ENSIPUG00000011655
UniProt: A0A2D0T605
Position
19:14488437..14501604
AA seq 466 aa
MAKRIAEKELTDRNWDQEDEGEEAGTFSVASEEVMKNRAIKKAKRRNLGADGENGGAFKS
FKGFSLTPSAPAAGGAFSTFGNGAGFKHLSFLTNGSAASVTPTFGGFNTPATAKSNPGIS
SSNGPASSSSSIESGDIMPNGSTPSLPAISGGGSSSKEYNRQLTALNCSVRDWITKHVND
NPLCDLNPIFRDYERHLATIESKYGSGAVAGGEQQPGKQANTTTSTLSSSSSGSNVSPAI
PALFSFTKNKDSAAPEKSSVPADATFNFGQKVDSLVLSSLKSAGASGFSFSSTSTSSSTT
SLFGAASTGTSTGTFSFTAAKNDAASNNQPAGENGADEESEEPPVPIVKEIKEKDAFYSK
KCKLFYKKESEFKEKGVGTLHLKLVSEGKLQLLVRADTNLGNILLNIMVHASMPCTRTGK
NNVMVVCVPNPPVDDKNPSTPVPMLIRVKTAEDADELHKLLQEKKA
NT seq 1401 nt   +upstreamnt  +downstreamnt
atggcaaagcggattgctgagaaagagctcactgataggaactgggatcaggaagatgaa
ggagaagaggcaggaacgttttcagttgcaagtgaggaagtgatgaaaaaccgggccatt
aagaaagccaagcgtcgaaatcttggagcagatggagagaatggaggagcttttaaaagc
tttaagggtttctctctgaccccgtcggctccagcggctggaggagctttctccacattt
ggaaacggggctggatttaaacacctctcttttttgaccaacggcagcgctgcatctgtc
accccaacttttgggggtttcaacacccctgccactgccaagtccaaccccggcatctca
tcatccaatggcccagcctcctcctcctcctccatagagagtggtgacatcatgcccaac
ggctccacccccagcctacccgcaatctctggaggaggcagcagcagtaaggagtacaac
cggcagctcacagctctcaattgctctgtgcgtgactggatcaccaagcatgtgaatgac
aacccgctgtgcgacctcaaccccatctttcgcgactatgagcgacacctggccaccatt
gagagcaagtacggcagtggcgcagtagcagggggggagcagcagccagggaaacaggca
aacaccaccaccagcacgctatcatcctcctcctccggcagtaatgtctcaccagccatt
cctgctttgttctccttcaccaagaacaaggacagtgctgctcctgagaaaagctccgtt
cctgcagatgctactttcaactttggccagaaggtggacagcttggtgctgagctccctt
aagtccgcaggggcttccgggttttcgttttcttccacctccacctcgtcctccaccacg
tctctgttcggtgcagctagcaccggcacttctacaggcaccttctctttcactgcggcc
aagaatgatgcagccagcaacaaccagccagcaggtgagaatggagccgatgaagaatcg
gaggagccaccagtacccatagtcaaagaaatcaaggagaaagatgccttctactctaaa
aagtgcaaactgttttataaaaaggaaagcgaattcaaggagaaaggagttggtaccctg
catttgaaactggtttcagagggcaagctgcagctcctggtgcgcgcggacacaaacctg
ggtaacatcctgttgaatatcatggttcatgcctccatgccgtgcacacggacagggaaa
aacaacgtcatggtggtgtgtgtgccaaatcccccagtggacgacaagaaccccagcacc
cctgtaccaatgctgatccgtgttaaaacagcagaggacgctgatgaactacacaaactt
ctgcaggagaagaaagcgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (49)   

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