KEGG   Isoptericola variabilis: Isova_1586
Entry
Isova_1586        CDS       T01520                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
iva  Isoptericola variabilis
Pathway
iva03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:iva00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Isova_1586
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:iva03019]
    Isova_1586
   03009 Ribosome biogenesis [BR:iva03009]
    Isova_1586
Enzymes [BR:iva01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Isova_1586
Messenger RNA biogenesis [BR:iva03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Isova_1586
Ribosome biogenesis [BR:iva03009]
 Prokaryotic type
  rRNA helicases
   Isova_1586
SSDB
Motif
Pfam: DEAD Helicase_C DbpA AAA_22 ResIII CMS1 adh_short
Other DBs
NCBI-ProteinID: AEG44339
UniProt: F6FUZ9
Position
1718733..1720556
AA seq 607 aa
MSTSETTLPTDVTFTDLALPAPLQAAVDDLGFTTPSPIQARAIPALLSGRDITGVAQTGT
GKTAAFGLPLLAAVDPAASVAGGHVQALVLTPTRELAIQVADAIESFATHLPGLRVLSVY
GGAPYVPQQRALRDGVHVVVGTPGRVMDHMERGALSLDAVRFLVLDEADEMLRMGFAEDV
EKIFGQAPERRQVALFSATMPPAIRTVAETHLTDPVEITVSRQSSTTTNVEQSYAIVPFR
HKVGSLVRVLATSDADATIVFTRTRAAAEEVGAALVERGISASTISGDVAQKERERIVER
LRSGALDVLVATDVAARGLDVDRIGLVVNFDIPREAEAYVHRIGRTGRAGRTGKALSFVT
PHERGKLKHIERTIRAELTEVEIPSPKDVSEHRARRMLDAVAARREAGRLDLYAQMLSER
TGGAEPSEVLEVAAALLALAVGDDGPRQRAEQEEFERQRAEARGGRTRETHRAEREDREG
DRTHRHPRADRPERGDRRRRDHDDRSGIRRPAAGTRYRLAVGHTHGVQPRGIVGALTNEG
GLTGADIGKIDIFGSFSLVDITTPLDTATMDRIGRAHVAGKQLRIAVDKGAPERRAPRTE
RRPAHSS
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgagcacctctgagacgaccctgcccaccgacgtcacgttcaccgacctcgccctgccc
gcaccgctgcaggccgccgtcgacgacctcggcttcaccaccccgtcgcccatccaggcc
cgggccatccccgccctgctgtccgggcgcgacatcaccggcgtcgcccagaccggcacc
ggcaagaccgccgcgttcggcctgcccctgctggccgccgtcgaccccgccgccagcgtg
gcgggcggccacgtccaggccctcgtcctcacgccgacgcgcgagctcgccatccaggtc
gccgacgcgatcgagtccttcgcgacccacctgcccggcctgcgcgtcctgtccgtgtac
ggcggcgcgccgtacgtgccccagcagcgcgccctgcgcgacggcgtccacgtcgtcgtc
ggcacccccggccgcgtcatggaccacatggagcgcggtgcgctctccctcgacgccgtg
cgcttcctcgtgctcgacgaggccgacgagatgctccgcatgggcttcgccgaggacgtc
gagaagatcttcggccaggcgcccgagcgccggcaggtcgcgctcttctccgcgaccatg
ccccccgccatccgcaccgtcgccgagacgcacctgaccgaccccgtcgagatcaccgtc
tcccggcagtccagcaccaccaccaacgtcgagcagtcgtacgcgatcgtgccgttccgc
cacaaggtcggctcgctcgtccgcgtgctcgcgacctccgatgccgacgccaccatcgtc
ttcacgcgcacccgtgctgccgccgaggaggtcggcgccgcgctcgtcgagcgcggcatc
tccgcctccaccatctccggcgacgtcgcgcagaaggagcgcgagcgcatcgtcgagcgc
ctccgctcgggagccctcgacgtcctcgtcgccaccgacgtcgccgcccgcgggctcgac
gtcgaccgcatcggcctcgtcgtcaacttcgacatcccccgcgaggccgaggcctacgtg
caccgcatcggccgcaccggccgcgccgggcgcaccggcaaggccctgtcgttcgtcacc
ccgcacgagcgcggcaagctcaagcacatcgagcgcaccatccgcgccgagctcaccgag
gtcgagatcccctcccccaaggacgtctccgagcaccgcgcccgccgcatgctcgacgcc
gtcgccgcccgccgcgaggccggccgcctcgacctgtacgcccagatgctctccgagcgc
accggcggcgccgagccgtccgaggtcctcgaggtcgcggcggcgctcctggcgctcgcg
gtcggcgacgacggccctcgccagcgcgccgagcaggaggagttcgagcgccagcgcgcc
gaggcccgcggcggccgcacgcgcgagacgcaccgtgccgagcgcgaggaccgcgagggc
gaccgcacgcaccggcacccgcgggcggaccgtcccgagcggggcgaccgccgtcggcgc
gaccacgacgaccggtccggcatccgccggcccgcggcgggcacccgctaccggctcgcc
gtcgggcacacgcacggcgtgcagccgcgcggcatcgtcggcgcgctgacgaacgagggc
ggcctcacgggcgccgacatcggcaagatcgacatcttcggcagcttctcgctcgtcgac
atcacgacgccgctcgacacggccaccatggaccgcatcggtcgggcgcacgtggccggc
aagcagctgcgaatcgcggtcgacaagggcgcgcccgagcgccgcgccccgcgcaccgag
cgccgccccgcgcacagcagctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (36)   

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