KEGG   Janthinobacterium agaricidamnosum: GJA_4997
Entry
GJA_4997          CDS       T03157                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
jag  Janthinobacterium agaricidamnosum
Pathway
jag03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:jag00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    GJA_4997 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:jag03021]
    GJA_4997 (rpoC)
   03400 DNA repair and recombination proteins [BR:jag03400]
    GJA_4997 (rpoC)
Enzymes [BR:jag01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     GJA_4997 (rpoC)
Transcription machinery [BR:jag03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     GJA_4997 (rpoC)
DNA repair and recombination proteins [BR:jag03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      GJA_4997 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 Apocytochr_F_C PYNP_C
Other DBs
NCBI-ProteinID: CDG85600
UniProt: W0VD66
Position
complement(5369042..5373298)
AA seq 1418 aa
MKALLDLFKQVQQNETFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFTAFM
GAEGIRELLRSIDIHRDAETLRVELKESKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEIQEPVVWDILEDVIREHP
IMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINAKNEGMMFPDVSEVIRAYDNK
EVELTTRVTVRITEYPKNAETGEFEKTITRYETTVGRAILSEILPKGLPFSVLNRALKKK
EISKLINTSFRKCGLRATVVFADKLMQSGFRLATRAGISICVDDMLVPPQKVTLIATAES
EVKQIEQQYASGLVTAGERYNKVVDIWGKTSDEVGKAMMDQLKVEDVTRRDGSKSTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTMNGTVMKALVEGGEVIEPLRDRI
LGRVVVHDVVNPETQETLYEAGTLMDEDMVEEIERLSIDEVKVRTPLTCDTRFGLCAKCY
GRDLGRGLLVNAGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTIR
FTATMRYVTNGKGAQIVISRSGEVLITDDHGRERERHKVPYGATLIVKDGMVIKAGTALA
TWDPLTRPIITEYAGQVRFENVEEGVTVARQVDEVTGLSTLVAIDAKRRGSLTKTLRPQV
KLINDANEEVKIAGTEHSVAIGFQVGALIMVKDGQQVSVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQIVNAGDTNYIVGEQVERSELLDENDRVTSENKIPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDGLRGLKENVIVGRLIPGGTGLAFHRARKEKEAWEVEE
RQALLLAEKASMAGEAAEALQDIETQAAAAAAQHDNEA
NT seq 4257 nt   +upstreamnt  +downstreamnt
atgaaagcactgctcgatctcttcaagcaagttcagcaaaacgaaaccttcgacgcgatc
aaaatcggtctggcttcgcctgaaaaaatccgttcgtggtcctacggcgaagtcaaaaag
ccggaaaccatcaactaccgtaccttcaagcctgagcgcgacggcttgttctgcgccaag
atctttggaccgatcaaggattacgaatgcctgtgcggtaaatacaagcgtttgaaacac
cgcggcgtgatctgcgaaaaatgcggcgttgaagtgacgctggcgaaagttcgccgcgag
cgcatgggccacatcgagctggcctcgccgaccgcccacatctggttcctgaaatccctg
ccgtcgcgtctgggcatggtgctcgacatgaccctgcgcgatatcgaacgtgtgttgtac
tttgaagcatatgtcgtgaccgatccaggcatgactccgctgaaaaagtgccagatcatg
tcggaagacgactacgccgccaagtacgaagagtacggcgacgatttcaccgcattcatg
ggcgccgaaggcatccgcgaattgctgcgctcgatcgacatccaccgcgatgccgaaacc
ctgcgcgtggaattgaaggaatcgaaatccgaagccaagatcaagaaatacgccaagcgc
ctgaaagtgctcgaggcattccagcgttcgggcatcaagcctgactggatgatcatggaa
gtgctgccggtgctgccgccggaattgcgtccgctggtaccgctcgatggcggccgtttc
gcgacctcggatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgcctgaaa
cgcctgatggagctgcgtgctccagaaatcatcacgcgcaacgaaaagcgcatgctgcaa
gaagcggtcgattcgctgctggacaacggccgtcgcggcaaggcgatgaccggcgccaac
aagcgtccgctgaaatcgctggccgagatgatcaagggtaaaggcggccgtttccgtcaa
aacttgctgggtaaacgcgtcgactactcgggccgttcggtcatcgtggtgggtccgcaa
ttgaaactgcatcagtgcggcttgccgaaactgatggcgctggaactgttcaagccattc
attttcaataaactggaattgatgggcctggcaaccacgatcaaggccgccaagaagctg
gtcgaaatccaggaaccggtggtgtgggacatcctggaagacgtgatccgtgaacatccg
atcatgttgaaccgtgcgcctacgctgcaccgcctgggtatccaggcattcgagccagtg
ctgattgaaggcaaggccatccagttgcacccgctggtctgcgccgcattcaacgccgac
tttgacggcgaccaaatggcggttcacgtaccactgtcgatcgaagcgcagatggaagcg
cgtaccctgatgctggcatcgaacaacatcctgttcccatcgaacggcgaaccgtcgatc
gtgccgtcgcaggatatcgtgctcggtctgtactacgcgacccgcgaagcgatcaacgcg
aagaacgaagggatgatgttccctgacgtgtccgaagtgatacgcgcctacgataacaag
gaagtcgaactgaccacccgcgttaccgtgcgtatcaccgagtacccgaaaaacgccgaa
acgggcgaattcgaaaaaaccatcacccgctacgaaaccacggtcggccgtgcgatcctg
tccgaaatcctgcctaaaggcttgccgttctcggtactgaaccgcgcgctgaaaaagaaa
gagatttcgaagctgatcaacacctcgttccgcaagtgcggcctgcgcgccaccgtggtg
ttcgccgacaagctgatgcaatcgggcttccgcctggcgacccgcgcaggtatttcgatc
tgcgtcgacgacatgctggtgccgccacaaaaagtgaccctgatcgcgaccgccgaatcg
gaagtcaagcagatcgaacagcaatacgcgtccggtctggtgaccgccggcgagcgttac
aacaaggtagtcgatatctggggcaaaacctcggatgaagtcggcaaggccatgatggac
cagctcaaggtcgaagacgtgacccgccgcgacggcagcaagtcgacccaggaatcgttc
aacgccatttacatgatggccgactccggcgcgcgcggttccgcggcgcagattcgccag
ttggccggtatgcgcggcctgatggcgaaaccggacggctcgattatcgaaacgccgatt
accgcgaacttccgcgaaggcctgaacgttttgcagtacttcatttcgacccacggcgct
cgtaaaggtctggccgatacggcgctgaaaaccgcgaactcgggttatttgacccgtcgt
ctggtcgacgtgacgcaagacctggtggtgatcgaggacgattgcggcaccatgaacggc
accgtcatgaaggcgctggtcgaaggtggtgaagtcatcgaaccgttgcgcgaccgtatc
ctcggccgcgtcgtggtgcacgatgtcgtcaaccctgaaacccaggaaacgctgtacgaa
gccggcacgctgatggacgaagacatggtcgaagagatcgagcgtctgtcgatcgacgaa
gtcaaggtccgtacgccactgacgtgcgacacgcgcttcggcctgtgcgccaagtgctat
ggacgcgacctgggccgtggcttgctggtcaatgccggcgaagcagtcggcgtggtggcg
gcgcagtcgatcggtgagcctggtacccagctgaccatgcgtaccttccacatcggtggt
gcggcgtcgcgtgcggcagtggcatcgtcggtggaagccaaatcgaacggcaccatccgc
ttcacagcaaccatgcgttacgtgaccaacggcaagggcgcgcaaatcgtcatttcccgt
tccggcgaagtgctgatcaccgacgaccatggccgcgagcgcgagcgtcataaggtaccg
tacggcgcgacgctgatcgtcaaggacggcatggtcatcaaggccggtaccgccctggcg
acgtgggatccgctgacccgtccgatcattaccgaatacgccggtcaagtgcgtttcgag
aacgtcgaagaaggcgtcaccgtggcccgccaggtcgacgaagtcaccggcctgtcgacc
ttggtcgcgatcgatgcgaaacgtcgcggttcgctgaccaagaccttgcgtccgcaagtc
aagctgatcaacgacgccaacgaagaagtcaagatcgccggcaccgaacattcggtggcg
atcggcttccaggtcggcgcgctgatcatggtgaaagacggccagcaagtgtcggtgggt
gaagtgctggcgcgtatcccgaccgaatcgcaaaaaacgcgcgacattaccggtggtttg
ccacgggttgccgagctgttcgaagcgcgttcgccgaaagacgccggcatgctggcggaa
gtcaccggtacggttgccttcggtaaagaaaccaagggcaagcaacgcctggaaatcacc
gacatggacggcaacaagcatgagttcttgatcaccaaggacaaacaagtgctggtgcat
gacggccaagtcgtgaacaagggcgagatgatcgtggacggcccggccgatccgcaagac
atcctgcgtttgctggggatcgaagcgctggcgcgttacatcgtcgacgaagtgcaagac
gtgtaccgtttgcaaggcgtgaagatcaacgacaagcacattgaagtgatcgtgcgtcag
atgctgcgccgtgttcagatcgtcaatgccggcgacaccaactacatcgttggcgagcag
gtggagcgttcggaattgctggacgaaaacgatcgcgtgacgtcggagaacaagatccct
gcgacctacgaaaacgtcttgctgggtattaccaaggcttccttgtcgaccgattccttc
atttcggccgcatcgttccaggaaaccacccgcgtgctgaccgaagcggcgatcatgggc
aagcgcgatggtttgcgcggcctgaaagaaaacgtcatcgtcggccgcctgatacctggc
ggtacgggcctggcattccaccgcgcacgcaaagagaaagaagcgtgggaagtggaagag
cgtcaagcgctgctgctggccgaaaaagcctcgatggccggcgaagctgccgaagcgttg
caagacatcgaaacgcaagcggctgccgcagccgcacaacacgacaacgaagcgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system