KEGG   Janthinobacterium sp. 17J80-10: EKL02_12005
Entry
EKL02_12005       CDS       T05896                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
jaj  Janthinobacterium sp. 17J80-10
Pathway
jaj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:jaj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EKL02_12005 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:jaj03019]
    EKL02_12005 (rnr)
   03016 Transfer RNA biogenesis [BR:jaj03016]
    EKL02_12005 (rnr)
Enzymes [BR:jaj01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     EKL02_12005 (rnr)
Messenger RNA biogenesis [BR:jaj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     EKL02_12005 (rnr)
Transfer RNA biogenesis [BR:jaj03016]
 Prokaryotic type
  tRNA degradation factors
   EKL02_12005 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1 Rrp44_S1 OB_Dis3 CSD
Other DBs
NCBI-ProteinID: QAU34847
UniProt: A0A410UTY9
Position
complement(2673837..2676338)
AA seq 833 aa
MSQYLYPIPSREEILGLLRTSKAALDAAALAAALGVKPDETEGLTRRLNAMERDGQIKPD
RKGHYQLANQTTFIEGRVSGHREGFGFLIPDDGGDDLFLSEREMQKVLNGDRVRARIVGV
DRRGRPEGSIVEVISRANTHVIGRLLNENGAWVVAPEDKRIGQDILLVGKPGKAKAGQVV
SVELIEQPARFTQPSGKIAEVLGDIDDPGMEIEIAVRKYGVPHEFSESALNQAAKLPGVV
VDADLHERVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRTAGYRLIVAIADVSHYVKPG
DSLDVDAIERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITKKGEIKAYQ
FYPAVIHSAARLTYTEVAAILGNTKGPEAAKRAALVPHLTHLYEVFQSLLTARHERGAID
FETTETYIVCDPNGKIEKILPRTRNDAHRLIEECMLAANVCAADLLERHEHPGVYRVHAR
PTKEKLTQVRNFLKQAGLHLGGGEEPMASDYAELLPKIKLRPDAVLLQTMLLRSMQQAVY
SPDNIGHFGLSYEAYAHFTSPIRRYPDLLTHRAIKAILQGKRYSPKGIDTTVLNTMLSPA
ARKMQAQNKAAGKKKSEGDLAIWEALGIHCSANERRADEASRDVEAWLKCYFIRDKLGEE
FTGTISGVAGFGIFVQLDQLYIEGMVHVTDLGADYFQYDETRHELRGERTGIRYQLTDRV
TVQVSRVDLDARKIDLRLVHEPGIHTQLKNEARRADAEQQPRAAKGRSNSRPAEEGGRTE
KPARNSQGTKSGKSNKGASPKGGGPAKSAPAKSSKTSRAPGSRAASKSARKKR
NT seq 2502 nt   +upstreamnt  +downstreamnt
ttgagccaatatctttatcccattcctagccgagaggaaatcctcggactattgcgtacc
tccaaagcggcgctggacgcagcggcccttgccgccgcgctcggcgtcaagcccgacgag
acggaaggcctgacgcgccgcctgaacgccatggagcgcgacggccagatcaagccggac
cgcaaggggcactatcaactcgccaaccagaccacctttatcgaaggccgcgtcagcggc
caccgtgaaggatttggtttcctgattccggacgatggcggcgacgatcttttcctctcc
gagcgggaaatgcaaaaagtgctgaacggcgaccgcgtacgggcacgcattgtcggagtc
gaccgtcgcggccgtcccgagggcagcattgtcgaagtcatctcgcgcgccaatacccat
gtgatcgggcgcctgctgaatgaaaacggcgcctgggtcgtggcacccgaagacaagcgg
atcggtcaggatatcctgttggttggcaagccaggcaaggccaaagccggccaggtggtc
agtgtcgaactgattgagcaacctgcgcgctttacccagccgtccggcaagatcgccgaa
gtgctgggcgatatcgatgaccccggcatggaaatcgaaatcgccgtgcgcaagtatggc
gtgccgcatgagttttccgagtcggcactgaatcaggccgccaagctgcctggcgtggtg
gtcgatgccgacctgcacgaacgtgtcgacttgcgcgacgtgccgctggtgaccatcgac
ggcgaggatgcgcgcgactttgatgacgcggtgtattgcgaacccgtgaagatcggccgc
actgccggctaccgcctgatcgtggcgattgccgacgtcagccattacgtcaagcccggc
gattcgctggatgtcgatgcgatcgagcgcagcacatcggtgtatttcccgcgccgcgtc
attccgatgttgccggaaaaattatccaacggcctgtgctcgctgaatccggacgtggac
cgcctgaccctggtgtgcgacgccgtcatcaccaagaagggcgagatcaaggcttaccag
ttctatccggcagtaatccattcggccgcacgcctgacctatacggaagttgccgccatc
ctgggaaataccaagggaccggaagcggcaaagcgcgcggccctggtgccgcacctgacg
cacctctacgaagtgttccagtccctgctgaccgcgcgccacgagcgcggcgcgatcgac
ttcgaaaccaccgagacctatatcgtctgcgatccgaacggcaagatcgaaaaaatcctg
ccgcgcacgcgcaacgatgcgcaccgcctgatcgaggaatgcatgctggcggcgaacgtt
tgtgccgctgacctgctggaacggcacgagcatcccggggtgtaccgcgtgcatgcgcgc
ccgaccaaggaaaagctgacgcaggtacgcaacttcctcaagcaggcggggctgcacctg
ggcggcggcgaggagcccatggcgtccgattacgccgagttgctgcccaagatcaagctg
cgcccggatgccgtgctgctgcagaccatgttgctgcgctccatgcagcaggctgtctac
agtccggacaatatcggccacttcggcctgtcctatgaagcctatgcgcacttcaccagc
ccgatccggcgctatccggacctgctgacgcatcgcgccatcaaggccattctgcaagga
aagcgttattcgcccaagggcatcgacaccacggtgctgaacaccatgctgtcgccggcg
gcacgcaagatgcaggcgcagaacaaggctgccgggaaaaagaaaagcgagggcgacctg
gcgatctgggaagcgctcggcatccactgttcggccaacgagcgccgcgccgacgaggcg
tcgcgcgatgtcgaagcctggctcaagtgctacttcatccgcgacaagctgggcgaggaa
ttcaccggcaccatttcgggtgtggcaggattcggcattttcgtgcagctcgaccagctg
tatatcgaaggcatggtgcatgtcaccgatctcggcgccgattacttccagtacgacgag
acgcgtcatgaattgcgcggcgagcgaaccggcatccgttaccagttgaccgaccgtgtc
acggtacaggtcagccgggtcgacctggatgcgcgcaagatcgacttgcgcctggtgcat
gagccgggcatccatacccagctcaagaacgaagcccggcgtgccgacgccgagcagcag
cccagggccgccaagggcaggagcaactcccggcctgcagaggaggggggcaggactgaa
aagcctgccagaaattcccaggggacaaagtcaggcaagagcaacaagggcgccagcccc
aagggcggcgggccggcaaagtcagccccggccaagtcgtcgaagacgtcgcgcgcaccc
ggcagtcgcgcggcgagcaaatccgccagaaaaaagcgttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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