KEGG   Jannaschia sp. CCS1: Jann_3002
Entry
Jann_3002         CDS       T00330                                 
Name
(GenBank) exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
jan  Jannaschia sp. CCS1
Pathway
jan03410  Base excision repair
jan03430  Mismatch repair
jan03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:jan00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Jann_3002
   03430 Mismatch repair
    Jann_3002
   03440 Homologous recombination
    Jann_3002
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:jan03400]
    Jann_3002
DNA repair and recombination proteins [BR:jan03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     Jann_3002
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     Jann_3002
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Jann_3002
SSDB
Motif
Pfam: RecJ_OB DHHA1 DHH tRNA_anti_2 Prok-RING_1
Other DBs
NCBI-ProteinID: ABD55919
UniProt: Q28MZ3
Position
3021889..3023637
AA seq 582 aa
MSVSFLGVEASLTGRRWIGPSDDVERLAQTLIQRADLDPAVAAILARRGVQPDDVASFLA
PALRDLLPDPMSLKDMAPAATRLVEAARKGKRIAIFADYDVDGGSSAALLIWWLRALGRQ
ATLYIPDRIDEGYGPNDEAMAALARGHDLIICVDCGTLSHGPIAAAKGADVMVLDHHLAT
AELPECVAVVNPNRQDEDGASGHLCAAGVVFLVLVDANRRMREAGEQGPDLMGLLDLVAL
ATVADVAPLIGVNRALVVQGLKVMARRQRPGLVALSDVGRLDRAPTSYHLGFVLGPRVNA
GGRIGAADLGARCLSTDDMAEAVKLAAQLDTLNTDRREIEQRVREAALVQAEARGLEAPL
VWAAEDGWHPGVVGIVASRLKDHTRRPAIVIGFDGDDGKGSGRSMAGVDLGASIQKLAAE
GLIQKGGGHKMAAGLSLSRAQLEPAMERLTELLAKQGAGTGGPADLRLDGTIMTSAATPE
LIEKIEAAGPYGAGAPAPRFALPALRIRHTRPVGETHLKLTLGDGGPVTIDAICFDAVRS
GLDELQAHNGRSVHVAGRVELNHWQGRTRVQLRLDDAAWADE
NT seq 1749 nt   +upstreamnt  +downstreamnt
gtgtccgtaagctttcttggcgtcgaggcatcgctgaccggccgccgctggatcggcccc
tccgacgatgtggaacgcctggcccagacactgatacagcgcgccgacctggaccctgcc
gtcgcagcgatcctcgcgcgtcgtggcgtgcagcccgacgacgttgcgagctttctggcc
cccgcccttcgcgatttgctgccggacccgatgagcctgaaggatatggcccctgcggcc
acacggttagtggaggccgcccgaaaagggaagcgtatcgcgattttcgccgactatgac
gtggacggcggatcttctgccgcgctgctgatctggtggctgcgcgcgctggggcggcag
gcgacgctctatattccggatcggattgatgaaggttatggcccgaatgatgaggcgatg
gccgcgcttgcccgcggccacgacctgatcatctgcgttgattgcggcacgttatcccat
ggccctattgcggcggccaagggcgcggatgtgatggttctagaccaccatctggcaacg
gcagagctgcctgaatgtgtggccgtcgtgaaccccaaccgccaggacgaggatggcgcg
agcgggcatctgtgtgcggcaggcgtcgtgtttctcgtgctggtcgatgccaaccgtcgg
atgcgggaggcgggcgagcagggcccggacctgatgggtttgcttgacctggtggccctt
gccactgtggctgatgtggcgccattgatcggtgtgaaccgcgcgctggtggtgcagggg
ctgaaggtgatggccagacggcaacgcccgggcctcgtggccctgtcggatgtggggcgg
ctcgatcgcgcgccgacgtcctatcacctaggcttcgttcttggaccccgtgtgaatgca
ggtgggcgcatcggagcagcagatttgggcgcgcgatgcctttcgactgacgacatggcc
gaagccgtgaaattggcggcgcaactggacacgctcaacaccgaccgccgcgagattgag
cagcgcgtgcgtgaagccgcgctggtacaggcggaggcacgtgggctggaagccccgctg
gtctgggccgccgaggacggctggcatccgggggtcgtgggcattgttgccagccgcctg
aaagaccacacgcgccgccccgccattgtcatcggttttgacggagacgacggcaaaggt
tcgggtcgctcaatggcgggggtcgaccttggggcgtcaatccagaaactggccgccgaa
gggctgatccagaagggcggcggtcacaagatggccgccggtctgtcgctgtcgcgcgcg
caacttgaacccgccatggagcgcctgacggagcttttggccaaacaaggtgctggcact
ggcggacctgcggacctgcgtctggacggaaccatcatgacctccgccgcgacgcctgag
ttgatcgagaaaatcgaggcggccggtccctatggcgcaggcgcccctgccccccgcttc
gccctgcccgccctgcgcatccgccatacaagacccgtgggcgagacccacctgaaactg
acgctcggcgatggcggcccggtcacgatagatgctatctgctttgacgccgtccgctcg
ggcctcgatgaattgcaggcccataatggtcgcagcgtccatgtggcaggacgggtggag
ctgaaccactggcaaggccgcacgcgggttcaattgcgcctagatgacgcggcttgggcc
gacgagtga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (33)   

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