KEGG   Janthinobacterium sp. 1_2014MBL_MicDiv: YQ44_23975
Entry
YQ44_23975        CDS       T04539                                 
Name
(GenBank) RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
jaz  Janthinobacterium sp. 1_2014MBL_MicDiv
Pathway
jaz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:jaz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    YQ44_23975
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:jaz03019]
    YQ44_23975
   03009 Ribosome biogenesis [BR:jaz03009]
    YQ44_23975
Messenger RNA biogenesis [BR:jaz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     YQ44_23975
Ribosome biogenesis [BR:jaz03009]
 Prokaryotic type
  rRNA helicases
   YQ44_23975
SSDB
Motif
Pfam: DEAD DbpA Helicase_C ResIII CMS1 UvrA_inter AAA_19
Other DBs
NCBI-ProteinID: APA70337
UniProt: A0A1I9Y2U5
Position
complement(5529523..5531667)
AA seq 714 aa
MSDTPISLFSDLQLSEPLVRALKDVGYETPSPIQAATIPLLLANRDVLGQAQTGTGKTAA
FALPILSRIDLKQSSPQALVLAPTRELAIQVAEAFQVYAAHIPGFHVLPIYGGQSYGPQL
SALRRGVHVVVGTPGRVIDHLDKGSLDLSKLKTLVLDEADEMLRMGFIDDVERILQETPE
GHQTALFSATMPSVIKRIATTYLVNPAEVTVAAKTGTADNIRQRYWLVSGMHKLDALTRI
LEAEAFDGMIIFARTKLGTEELAGKLQARGFSAAAINGDIQQAQRERTIQQLKDGKIDIL
VATDVAARGLDVERISHVVNYDVPHDPESYTHRIGRTGRAGRSGEAILFITPREKNLLKA
IERSTRQPIGMLELPTIQAVNDVRIAKFKEQISETLALGELEQFQSLIEDFEREQNIPAI
EIAAALAKMARGNVPLLLDKNKAREQATWQDDRPVRQDRFERNDRPERGDRFDRNERSER
PAFPKKERISRPADAGMQTFRIEVGHQHGVKPGNIVGAIANEAGIDSKNIGRIEIYDDYS
VLDLPDSMPKELLDQLKTVWVAGQQLRISRDGDAPDLAPPAAPRKPFAAKSAPAFKDAPA
DAGDAPVRAPKKERPRPGVTAYRIEVGREHAVTPSNIVGAIANEANLEAKHIGRIDIFDN
YSVLDLPEGMPPEILDHLKSVVVSGQKLRISLDDGTTERKPAPPRPKSPRKTFK
NT seq 2145 nt   +upstreamnt  +downstreamnt
atgtctgatacaccaatttccttattttccgaccttcaactgagcgagccgctggttcgc
gcgctcaaggatgtcggttacgaaacaccgtcgcctatccaggcggccacgattccatta
ttgctcgccaaccgcgacgtgctgggccaggcgcaaacgggcacgggtaagaccgccgcc
ttcgccttgcctatcctgtcgcgcatcgatctgaaacaaagctcaccccaagccctggtc
ctggcaccgacgcgcgaactggccatccaggtcgccgaagcgttccaggtgtacgccgcc
cacattcccggcttccacgtgctgccgatctacggcggccaaagctacggcccgcagctg
tcggcgctgcgccgcggcgtgcacgtcgtcgtcggcacgccgggccgcgtcatcgatcac
ctggacaaggggtcgctcgacctgtccaagctcaaaaccctggtactcgacgaagccgat
gaaatgctgcgcatgggctttatcgacgacgtcgaacgcatcttgcaagaaacgccggaa
ggccatcaaacggccctgttctcggccaccatgccttccgtcatcaagcgcatcgccacg
acctacctggtcaatccggccgaagtgacggtcgccgccaagacgggcacggccgacaac
atccgccagcgctactggctggtgtcgggcatgcacaagctcgacgcgctgacccgcatc
ctggaagcggaagcgttcgacggcatgatcatcttcgcccgcaccaagctgggtacggaa
gagctggccggcaagctgcaggcgcgcggtttctcggctgccgccatcaatggcgacatc
cagcaagcgcagcgcgagcgcacgatccagcagttgaaagacggcaagatcgacattttg
gtcgcaaccgacgtggccgcccgcggcctggacgtcgagcgcatcagccacgtcgtcaac
tacgacgtgccgcacgatccggaaagctacacccaccgcatcggccgcacgggccgcgcc
ggccgcagcggcgaagcgattttgttcatcactccgcgtgaaaagaacttgttgaaagcc
atcgaacgctcgacccgccagccgatcggcatgctggaactgccaacgatccaggccgtc
aacgacgtgcgtatcgccaagttcaaggaacagatcagcgaaaccctggccctgggcgaa
ctggagcagttccagtcgctgatcgaggatttcgagcgcgaacagaatatccctgccatc
gaaatcgccgccgccctggcgaagatggcgcgtggcaatgtgcctttgttgctggacaag
aacaaggcgcgcgagcaagccacgtggcaggatgaccgtcccgtgcgccaagaccgcttc
gaacgcaacgaccgtccggaacgcggcgaccgtttcgaccgcaacgagcgcagcgaacgc
ccggccttcccgaaaaaggaacgcatttcgcgtccagccgacgccggcatgcagactttc
cgtattgaggtaggtcatcaacatggcgtcaaaccgggcaatatcgtcggcgccatcgcc
aacgaagcgggcatcgattcgaaaaacatcggccgcatcgaaatctatgacgactacagc
gtcctggatttgccagacagcatgccgaaagaattgctggaccagctgaagaccgtgtgg
gtggcgggccagcaactgcgcatcagccgcgatggcgatgcaccggacctggcgccgcca
gccgcgccgcgcaagccgttcgccgccaagtcggcgcccgcattcaaggatgcaccggcc
gacgcgggcgatgcgccagtgcgcgcaccgaagaaggaacgtccacgcccgggcgtgacg
gcgtaccgcatcgaagtgggccgcgagcacgccgtgacgccaagcaatatcgtcggcgcc
atcgccaacgaagcgaacctggaagccaagcatatcggccgcatcgacatcttcgacaat
tacagcgtgctggacttgccggaaggcatgccgccggaaatcctcgaccacctgaaatcg
gtcgtcgtctcgggccagaagctgcgcatcagcctcgacgatggcacgacggagcgcaag
cctgcgccaccgcgtccgaagtcgccgcgcaagacctttaagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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