KEGG   Jatropha curcas (Barbados nut): 105637649
Entry
105637649         CDS       T03922                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
jcu  Jatropha curcas (Barbados nut)
Pathway
jcu03013  Nucleocytoplasmic transport
jcu03015  mRNA surveillance pathway
jcu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:jcu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105637649
  09122 Translation
   03013 Nucleocytoplasmic transport
    105637649
   03015 mRNA surveillance pathway
    105637649
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:jcu03019]
    105637649
   03041 Spliceosome [BR:jcu03041]
    105637649
Enzymes [BR:jcu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     105637649
Messenger RNA biogenesis [BR:jcu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     105637649
Spliceosome [BR:jcu03041]
 Complex C
  Other components
   EJC/TREX
    105637649
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    105637649
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 YihI
Other DBs
NCBI-GeneID: 105637649
NCBI-ProteinID: XP_012076586
UniProt: A0A067KF23
Position
Unknown
AA seq 428 aa
MGETRDNDAYEEELLDYEEEEEKAPDSVAAKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTTGQVIALV
LCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVNIKTHKDLLKNECPHIVVGTPGRILA
LAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq 1287 nt   +upstreamnt  +downstreamnt
atgggagaaacaagggacaacgatgcatacgaggaggagcttctcgactacgaggaagaa
gaagagaaagcccctgattctgttgctgccaaagtcaatggcgaatcagccaagaagggg
tatgtcggaatacacagttcgggattcagagacttccttttgaagcctgagcttctacgg
gcaattgtggattcaggatttgagcatccttctgaagttcaacacgagtgtatccctcaa
gctatcttgggcatggatgtcatctgccaagccaaatctgggatggggaagactgctgtt
tttgttctgtctactctccagcaaattgaacctacgactggccaagttattgctcttgtt
ttatgtcatactagggagttggcttatcagatctgtcacgagtttgagaggtttagtacc
tatctgcctgatactaaggttgctgtcttctatggtggtgtcaatatcaaaactcacaaa
gacttattgaaaaatgagtgcccacatattgttgttgggacacctggaagaatactggca
ctagcgagagagaaggacctctcgttgaagaatgtgaggcattttatacttgatgaatgt
gataagatgcttgaatcgcttgatatgaggagagatgtgcaggaaatcttcaagatgact
cctcatgataagcaagttatgatgttttctgcaacactcagcaaagaaatccgcccagtt
tgcaagaaatttatgcaagatccgatggaaatttacgttgatgatgaagccaagttgacc
ctccatggtcttgtacagcactacatcaagttaactgagctggagaaaaacagaaagttg
aatgatcttctcgatgcactggacttcaatcaagttgtcatctttgttaaaagtgtgaac
agagcagctgagctgaacaagttacttgtggagtgcaattttccctcgatttgcattcac
tctgggatgtcccaagaagaaaggttgacgcgctacaaaggattcaaggaggggcataaa
aggattcttgttgctacagatttggttggtaggggaattgatattgaacgggtcaatatt
gttatcaactatgacatgccagattctgctgacacttacttgcacagagttggtagagct
ggtaggtttgggactaaagggcttgcaattacgtttgtttcatctgcttctgactctgat
gtactaaatcaggttcaggagaggtttgaggtagacataaaggagcttcctgagcagatt
gatacatctacgtacatgccatcataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (24)   

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