KEGG   Jatropha curcas (Barbados nut): 105640838
Entry
105640838         CDS       T03922                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
jcu  Jatropha curcas (Barbados nut)
Pathway
jcu03020  RNA polymerase
jcu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:jcu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    105640838
  09124 Replication and repair
   03420 Nucleotide excision repair
    105640838
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:jcu03021]
    105640838
   03400 DNA repair and recombination proteins [BR:jcu03400]
    105640838
Transcription machinery [BR:jcu03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     105640838
  RNA polymerase III system
   RNA polymerase III
     105640838
  RNA polymerase I system
   RNA polymerase I
     105640838
DNA repair and recombination proteins [BR:jcu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      105640838
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N DNA_pol3_alpha Ribosomal_S8
Other DBs
NCBI-GeneID: 105640838
NCBI-ProteinID: XP_012080620
UniProt: A0A067K3V6
Position
Unknown
AA seq 206 aa
MTLSEDEIKRLFRIRKTVMQMLKDRGYLVTDYEINMTREQFISKYGENMKREDLVINKSR
RNEPSDQIYVFFPEEQKVGVKTMKTYTNRMKNENVYRAVLVVQQNLTPFARTCISEIASK
FQLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLERYTVKETQLPRIQVTDPIARYFG
LKRGQVVKIIRPSETAGRYITYRFVV
NT seq 621 nt   +upstreamnt  +downstreamnt
atgactctatcagaggacgaaattaagaggcttttcagaatacgaaagacagtcatgcaa
atgctcaaggataggggttatctcgtaacagactatgagatcaacatgacaagggaacag
ttcatctcaaaatatggtgagaacatgaaaagggaagaccttgttatcaacaaatccagg
cgtaatgagcccagtgatcagatttatgttttctttcctgaagagcagaaagttggtgtc
aagacgatgaagacttataccaatcgcatgaaaaatgagaatgtttacagagcggtcttg
gtggttcagcaaaatttgaccccttttgctcgaacatgtatatctgagatagcttcaaaa
ttccagctggaggtcttccaggaagcagagctgctggttaacatcaaagagcatgttctt
gtccctgagcatcaggtgctaacaaatgaagagaagaagacattgttagagagatacact
gtgaaggaaacacagctgcctcgaattcaggtgactgacccaattgctaggtattttggg
ttgaagcgtgggcaagttgtgaagatcatcaggcctagtgaaactgcaggacgatatatt
acttaccgatttgttgtataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (8)   
   RefSeq(nuc) (2)   
   GenBank (3)   
   EMBL (3)   
Protein domain (4)   
   Pfam (4)   
All databases (25)   

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