KEGG   Jatropha curcas (Barbados nut): 105648942
Entry
105648942         CDS       T03922                                 
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
jcu  Jatropha curcas (Barbados nut)
Pathway
jcu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:jcu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105648942
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:jcu03019]
    105648942
Enzymes [BR:jcu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     105648942
Messenger RNA biogenesis [BR:jcu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     105648942
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     105648942
SSDB
Motif
Pfam: Exo_endo_phos zf-C6H2 FTP PDE12-like_N
Other DBs
NCBI-GeneID: 105648942
NCBI-ProteinID: XP_012090837
UniProt: A0A067JDF9
Position
Unknown
AA seq 603 aa
MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKTVTTDDVPESAPLDGHFLRYKWYRIQSDR
KVAICSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASSVNENG
NEEEELFGRFNSSGSGVINTTLSGSASSASLTNGSAPLYPAAVTQRSGGETWFEVGRSKT
YTPSADDIGHVLKFECVVVDAETRVPVGHPNTILTSRVIPAPSPTPRRLIPVSGADLMGH
LDSDGRLSSSGTFTVLSYNILSDVYATSESYSYCPSWALSWPYRRQNLLREIVGYRADIV
CLQEVQSDHYEEFFAPELDKHGYQALYKRKTNEVYNGNTHTIDGCATFFRRDRFSHVKKY
EVEFNKAAQSLTEAVVPSAQRKTALNRLVKDNVALIVVLEAKFSNQGADNLGKRQLLCVA
NTHVNVHQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHSLLAMGKVD
PLHPDLVVDPLGILRPHSKLTHQLPLVSAYSSFARLGIGLGLEQQRRRMDPTTNEPLFTN
CTRDFIGTLDYIFYTADSLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCKPR
PRR
NT seq 1812 nt   +upstreamnt  +downstreamnt
atgctgagcgtgctacgggtgcacctgccgtcggatattcccattgtaggctgtgaacta
acgccgtacgttcttttacggcgacctgacaagaccgtcacaacggacgatgttccagag
tcggctcctcttgacggtcatttcttgaggtacaagtggtatcggatacaaagtgataga
aaagttgctatttgtagcgtacatccgtctgaacaagcaacattgcagtgtttaggctgt
gttaaggccaaaatacctgttgccaaaagttaccattgctctcccaagtgcttctctgat
gcatggcagcatcaccgtgttctacatgaccgtgctgcaagttctgtaaatgaaaatgga
aacgaggaggaagagttatttggccgcttcaatagctctgggtctggagttattaatacc
actttgtctggttctgcatcaagtgccagcttgacaaatggttctgcacctttatatcct
gcagcagttactcagaggagtggtggtgaaacttggtttgaagttggacgttctaaaaca
tatactccatcagctgatgatattggccatgttctcaagtttgaatgtgttgtggtagat
gcagaaactagagtacctgtaggacatcccaacactattctaacttcccgtgttattcct
gctccctctccgactccacgtcgcttgatcccagttagtggagctgatttgatgggacat
ttagattcagatggccgtctttcatcatctggaacctttactgtcctttcatacaacatt
ttgtctgatgtttatgcaacaagcgagtcatacagttattgcccctcatgggctctttca
tggccatatcgccggcagaatttgctgcgggaaatagttggataccgtgcagacattgtt
tgtcttcaggaggttcaaagtgatcattatgaggagttttttgccccggagttggacaaa
catggttatcaagctctttataagagaaaaaccaatgaggtttacaatggaaatactcat
acaattgatggttgtgcaacgttctttcgtagagataggttttcacatgtcaaaaaatat
gaggttgagtttaataaagctgctcagtctttgactgaagctgttgttccaagtgctcag
aggaaaactgctttaaatcgattggtcaaggataatgttgcattaatagtggtattggaa
gcaaagttcagtaatcaaggagccgataatcttgggaaacgccaacttctttgtgttgca
aatacacatgtaaatgtccaccaagatttaaaggatgtcaagctttggcaggtccacact
cttctgaaaggattggagaaaatagctgccagcgcagacattccgatgttagtatgtgga
gatttcaattcagtccctggaagtgctccacattcacttcttgccatgggaaaggtagat
ccattgcatccggatttagtggtggaccctcttggcatcttacgtcctcacagcaagctt
acacatcagctgccactggtcagtgcttactcatcttttgctagactgggcattggtctt
ggtttggaacagcagaggaggaggatggaccccacaaccaatgaacccttatttacaaac
tgcactagagattttattggcaccctagattatatattttacacagcggactcattgaca
gtggagtccttgttggaactcttggatgaggaaagcttaaggaaagatacagcccttcct
tctccagagtggtcatctgatcatatagcacttttagctgaatttcgttgcaagcctaga
ccaagacgttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (21)   

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