KEGG   Jeotgalibaca ciconiae: EJN90_05085
Entry
EJN90_05085       CDS       T05782                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
jeh  Jeotgalibaca ciconiae
Pathway
jeh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:jeh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EJN90_05085
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:jeh03021]
    EJN90_05085
   03019 Messenger RNA biogenesis [BR:jeh03019]
    EJN90_05085
Transcription machinery [BR:jeh03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     EJN90_05085
Messenger RNA biogenesis [BR:jeh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     EJN90_05085
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA AAA_22 Mor Ribosomal_L7Ae
Other DBs
NCBI-ProteinID: AZP04091
UniProt: A0A3Q9BK07
Position
complement(1105272..1106531)
AA seq 419 aa
MEDMLSLQELEKKTLKEIYTFAKEYKIPYYSQMTKKELAHAIIRAQEEKQGFFMTEGVLD
IISQEGYGFLRPINYSPSQEDIYISSSQIRRFDLRNGDKVGGKARPPKSSERYYGLMQVN
SVNGRNPEEAKERSHFPGLTPIYPDKKIIIETTQKNLSNRMIDLISPIGFGQRGLIVAPP
KAGKTSLLKSIANGITANYPDVELIMLLIDERPEEVTDIERSVDGDVVYSTFDQQPANHV
RVSELVLERAMRLVEDKRDVVILMDSITRLARAYNLVVPPSGRTLSGGIDPAALYRPKRF
FGAARNIEDGGSLTILATALVDTGSRMDDMIYEEFKGTGNSELVLSRELAERRIFPAIDI
KKSGTRREELLLNSKEMEGIWKLRKAMRGDTLEYTEEFLKQLRTTRNNEEFSTRISLMK
NT seq 1260 nt   +upstreamnt  +downstreamnt
atggaagatatgctgtcccttcaagaacttgaaaagaaaacattaaaggaaatatatacg
tttgccaaggaatataaaattccttattacagccaaatgacgaaaaaagaacttgctcat
gcaattattcgtgcgcaagaagaaaagcaaggattttttatgactgagggcgttcttgat
atcatttcgcaggaaggctatggttttttacggccaattaattattcaccgagtcaagaa
gatatttacatttcttcttctcaaatacgtcgttttgatttacgtaacggagataaagta
ggtgggaaagcacgaccgccaaaatcttccgagcgttattatgggttaatgcaagtaaac
agtgtaaatggcagaaatccggaagaggcaaaagaacgttcgcatttccctgggctgaca
cccatttatcctgacaaaaaaattattattgaaacaacacagaaaaacctttcaaatcga
atgattgatttgatttcacctatcggctttggacaacgtggtttaattgttgcgccccct
aaagcaggaaaaacttctcttttaaaaagcatagcgaacggtatcactgcgaattatccg
gatgtagaattgattatgttattaatagatgagcgtcctgaagaagtaactgatattgaa
cgaagtgtagatggcgatgttgtttattctacttttgaccagcaaccggccaatcatgtt
cgtgtgagtgaacttgtattggagcgagcaatgcgtctcgtggaagacaagcgtgatgtc
gttattttaatggatagcattactcgtttggcacgtgcttataatttagtggttccacca
agcggtcgtacattaagtggagggattgatcccgctgcattgtaccgcccgaaacgattc
tttggcgcggctcgtaatattgaagacggcggaagcttaaccatattggcgaccgcacta
gtagatacgggaagccggatggatgatatgatttatgaagaatttaaaggaacaggaaac
tctgaactggtcctatctcgtgaactggcagagagaaggatattccctgcgattgatatt
aaaaagtctggtacgcgtcgcgaggaattattgctgaactcaaaagagatggaaggcatt
tggaagcttcgtaaagcaatgcgcggcgatacgttggagtatacagaagaattcttgaaa
caactgcgcaccacaagaaataacgaagagttctcaacgcgaatttctttaatgaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (16)   

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