KEGG   Jeotgalibacillus malaysiensis: JMA_11350
Entry
JMA_11350         CDS       T03570                                 
Name
(GenBank) DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
jeo  Jeotgalibacillus malaysiensis
Pathway
jeo03030  DNA replication
jeo03410  Base excision repair
jeo03420  Nucleotide excision repair
jeo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:jeo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    JMA_11350
   03410 Base excision repair
    JMA_11350
   03420 Nucleotide excision repair
    JMA_11350
   03430 Mismatch repair
    JMA_11350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:jeo03032]
    JMA_11350
   03400 DNA repair and recombination proteins [BR:jeo03400]
    JMA_11350
Enzymes [BR:jeo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     JMA_11350
DNA replication proteins [BR:jeo03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     JMA_11350
DNA repair and recombination proteins [BR:jeo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     JMA_11350
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     JMA_11350
   MMR (mismatch excision repair)
    DNA ligase
     JMA_11350
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      JMA_11350
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD HHH PTCB-BRCT RNA_pol_A_CTD HHH_8 HHH_3 BRCT_2
Other DBs
NCBI-ProteinID: AJD90452
UniProt: A0A0B5AP66
Position
1019820..1021832
AA seq 670 aa
MSQTTEKRVQELHERLNQYNYEYHVLDKPSVPDAEYDQLLNELKEIEAEHPEYATSDSPT
QRVGGAVLEQFSKVTHRTSMLSLGNAFNEDDLKDFDRKVREVAGDSAMYSCELKIDGLAV
SLRYEDGLFVQGATRGDGSVGEDITANLKTIRSIPLRLKKPLSIEVRGEAFMPKSSFLKL
NEEREKKEEALFANPRNAAAGSLRQLDPRIAASRNLDIFLYAIGDPGDTGVRSQSEGMKL
LDEMGLKTNPERKMCSTIDEVMDYIHEWTEKRAELAYDIDGIVIKVDSLDHQEELGFTAK
SPRWAIAYKFPAEEVVTVLRDIELSIGRTGVVTPTALLDPVKVAGTTVQRASLHNEDLIR
EKDIRIGDHVVIKKAGDIIPEVVSVITDKRTGEEEEFHMPTHCPACESELERLEGEVALR
CLNPKCPAQLQEGLTHFVSRNAMNIDGLGEKVIAQLYQTELIEDVADLYRLTKDQLIGLD
RMGEKSADNLLNAIEASKGNSMEKLLFGLGIRHVGAKAARTISEHFRTVDALKEATVEEL
CQIDEIGNKMADAIVTYFENEEVLELIEELRENGVNLTYTGPVKQKAEDIDSAFAGKTIV
LTGKLAQLTRGDAKEKIELLGGKVTGSVSKKTDLLIAGEDAGSKLTKAQDLNIPVWDEDQ
LVAEITKQEV
NT seq 2013 nt   +upstreamnt  +downstreamnt
gtgagtcagactactgaaaaaagagtacaggagctgcatgagcgattgaatcagtacaat
tatgaataccacgtactggacaagccgtcagttcctgatgctgaatatgatcagttatta
aatgaacttaaagagatagaagcagagcaccctgagtacgccacttccgattcacccact
cagcgtgtaggcggtgctgtacttgagcaattttcaaaagttacacaccgtacctctatg
ctgagccttggcaatgcttttaacgaagacgatcttaaagactttgaccgcaaagtaaga
gaggtagcaggagatagtgcgatgtacagctgtgagctgaaaattgacggtctggctgtg
tctctcagatatgaagacggattatttgtccagggtgctacaagaggtgacggttcagtt
ggagaagatatcacagcgaacctgaagacgatcagatcaattccactcagattaaaaaag
ccgctgtcgatcgaagtccgcggagaggcgtttatgccgaaatcttcttttctgaagctg
aatgaagaaagagaaaagaaagaagaagcgctttttgccaatcctagaaacgcagctgca
ggatcactcagacagcttgacccgcgtattgcagcatcaagaaaccttgatatttttctt
tatgcgatcggtgacccgggggatactggcgtcaggtcgcaaagtgaagggatgaagctg
cttgatgagatggggctgaaaacaaaccctgaacggaagatgtgcagcactattgatgaa
gtaatggattacattcatgaatggactgaaaaaagagcggaacttgcctatgatattgac
ggtattgttataaaagttgactcccttgatcatcaggaagagcttggctttaccgctaaa
agtccaaggtgggcaattgcttataagtttcctgctgaagaagttgtgaccgtacttcgt
gacattgaactgagcattggcagaaccggagtagtaacgccaaccgcactgctcgacccg
gttaaagttgccggtacaacggtccagagagcttcacttcataacgaagatctgattcgt
gaaaaggatattcggattggagatcatgtcgtcattaaaaaagcaggagacattattcct
gaagtggtcagtgtgattactgacaagcgtacaggtgaggaagaagagtttcacatgcca
acgcattgtccggcatgtgaaagtgaacttgaacgtcttgagggggaagtggcactgcgc
tgcctgaatccgaaatgtcctgctcagctgcaggaaggactgactcactttgtatcaaga
aatgcgatgaatattgatggactcggtgagaaagtcatcgcccagctttatcagactgag
ctgattgaggatgtagcagacctttaccgtctgacaaaagatcagctgatcgggcttgac
cggatgggcgagaagtcagctgacaatctgctgaatgcgattgaagcatctaaaggcaat
tcaatggaaaagctgctgttcggtctcgggattcgtcacgttggagcaaaagcagccaga
acaatctcagagcatttcagaacggttgatgcactaaaagaagcaacagtagaagaattg
tgtcaaattgatgaaattggtaacaaaatggccgatgcaatcgtcacatactttgagaac
gaagaagtgctggaactaatcgaagaactgcgtgagaatggcgtcaatctaacctataca
ggacctgttaagcaaaaggcagaagatattgattcagcttttgcaggcaaaacaattgtc
ctgacaggtaaattggcacaattgacacgaggcgatgcgaaagagaaaattgaattactc
ggtggaaaagtcactggcagcgtcagtaaaaagacagatctgttaatcgcaggtgaagat
gcaggatcgaaactgacaaaagcacaggatttgaatataccagtctgggacgaagatcag
ctggtagcagaaattacaaaacaagaggtgtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (57)   

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