KEGG   Jeotgalibaca sp. PTS2502: BW721_06470
Entry
BW721_06470       CDS       T04689                                 
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
jep  Jeotgalibaca sp. PTS2502
Brite
KEGG Orthology (KO) [BR:jep00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:jep03009]
    BW721_06470
Enzymes [BR:jep01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     BW721_06470
Ribosome biogenesis [BR:jep03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    BW721_06470
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 Met_10 TRAM PrmA MTS Methyltransf_25 Cons_hypoth95 Methyltransf_15 TRM RrnaAD Methyltransf_11 UPF0020 Methyltransf_12 Methyltransf_32 Methyltransf_23 Methyltransf_18 TM1506 Ubie_methyltran DNA_methylase
Other DBs
NCBI-ProteinID: APZ49352
UniProt: A0A1U7ECQ7
Position
complement(1319578..1320963)
AA seq 461 aa
MTNNYQELPVKKNEKIKVNFEDLTSEGLGVAKVDGYPLFVVDGLPGETAIVKVTKLGKSY
GFARIEERLTTSQDRIPTRDVLGTRVGTMPLQHLRYDAQLAFKQNMVTQDFKRIAKLPDI
EVLPTIGMNEPWGYRNKAQIPVREKDGKLQTGFFRKNTHELIPMETFHIQDPKIDEAIVK
VRDILQEFNVKAYDERKHIGNIRHIMVRRGYYTGEMMIVLVTRTAKLFPKSKIIPAILEA
LPEVVSIVQNVNPKRSNVILGEETIILHGEDRYHDQLLGLTFGVSSKSFYQINPLQTEIL
YKLALEAAQLSGEETVIDAYCGIGTISLALAQKAKQVYAMEIVPDAIEVAKENAANNQID
NVVFEVGAAEEVMPKWAEAGIKADVIVVDPPRKGLDAAFIEAAVAVNPKRIVYVSCNPAT
LARDLRILADNGYEATQAQPVDLFPQTLHVETVVALTRVEK
NT seq 1386 nt   +upstreamnt  +downstreamnt
atgacgaacaactatcaggaacttcctgtaaaaaaaaatgaaaagataaaggtgaacttc
gaagatttaacttctgaaggactaggcgtagcgaaagttgacggctatccattatttgtg
gttgatggtttacccggcgaaacggcaattgtaaaagtaacgaaattaggcaaatcatat
ggcttcgctcgtattgaagaacgcttaacgacatctcaagaccgtattccaactcgtgac
gtgttaggaacacgtgtcggaacgatgccacttcaacacttgcgttatgacgcacaactg
gcattcaagcaaaatatggtaacgcaagacttcaagcgtattgcaaaattaccagatatc
gaagttctaccaacaatcggtatgaacgagccatggggctaccgtaacaaggcacagatt
ccggttcgtgaaaaagacggaaaactgcaaacagggttcttccgtaaaaatactcacgaa
ttgattccaatggaaaccttccatattcaagatccaaagattgatgaagcgattgtaaaa
gttcgtgacattctgcaagaattcaatgtgaaagcttacgacgaacgtaaacatatcggg
aatatccgtcacattatggttcgccgcggttattacactggtgaaatgatgattgtttta
gtaacacgtacagcgaaactattccctaagagcaaaattattccagctatcttggaagct
ttgccagaagtagtcagtatcgttcaaaatgttaacccaaaacgaagcaatgtgatttta
ggcgaagaaacgattatcttgcacggcgaagaccgttaccatgaccaattattaggctta
acatttggtgttagttcaaaatctttctaccaaattaacccactacaaactgaaatcctt
tataagcttgcattagaagccgctcaactaagcggtgaagaaacagtgattgatgcttat
tgtggtattggtacaatttcattggcattagctcaaaaagcgaaacaagtttacgcaatg
gaaatcgttcctgacgcgattgaagtagccaaagaaaatgcagcaaacaaccaaattgac
aatgttgtctttgaagtcggtgctgcagaagaagttatgccgaaatgggcagaagcaggt
attaaagcagacgtgatcgttgttgatccaccaagaaaaggattggatgcagccttcatt
gaagcagccgtagctgtaaaccctaaacggatcgtttacgtcagctgtaacccagcgaca
ctagctcgcgatttaagaatcctagctgacaacggctatgaagcaactcaagcccaacca
gtagacttgttcccacaaacactacacgttgagacggtagtcgcactaacgcgcgtagaa
aaataa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (20)   
   Pfam (20)   
All databases (33)   

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