KEGG   Janibacter limosus: EXU32_01675
Entry
EXU32_01675       CDS       T05853                                 
Name
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
jli  Janibacter limosus
Pathway
jli03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:jli00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EXU32_01675
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:jli03400]
    EXU32_01675
Enzymes [BR:jli01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EXU32_01675
DNA repair and recombination proteins [BR:jli03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EXU32_01675
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: QBF45087
UniProt: A0A4P6MTP0
Position
complement(342810..343745)
AA seq 311 aa
MRPMLATLTETVPAGPEWVHEVKWDGMRILAEAKGGGLTLTSRSGRDVTVAFPELVPLAD
LYDDMLLDGEVVSFADGRPSFAALADRMHVADARKAARAAVARPVTFVVFDVVRLLGQDL
TAQPWSARRALLEQLDLEGPRWQVPATHDDGEGLLAATAEQGLEGIVSKRRSSPYSPGRR
SPDWLKRPHRDTLSVVVGGWRPETGGNRLGAVLVGRPGDGGWEFVGRVGAGLAGRAGASL
LTRLRPLERADSPFVSPVPREDAVGTIWVEPEVVLDVASLGRGGGGRLRQPSHQRVRTDL
TAADLMETSDG
NT seq 936 nt   +upstreamnt  +downstreamnt
atgcgcccgatgctcgccaccctcaccgagacggtcccggccgggccggagtgggtgcac
gaggtcaagtgggacggcatgcgcatcctcgccgaggcgaagggaggcggcctgaccctg
acgagccgctccggccgtgacgtcaccgtcgccttccccgagctggtcccgctggccgac
ctctacgacgacatgctcctcgacggcgaggtggtctccttcgccgacgggcgcccgtcc
ttcgccgcgctcgccgaccggatgcacgtggccgacgcgcgcaaggcggcccgggccgcc
gtcgcccgtccggtgaccttcgtcgtcttcgacgtggtgcggctgctcggccaggacctg
acggcccagccgtggtcggcccgacgcgccctgctcgagcagctcgacctcgagggccct
cgctggcaggtccctgcgacccatgacgacggcgagggcctgctggccgccacggccgag
caggggctcgagggcatcgtctccaagcgacgctcctcgccctactcccccggacggcgc
tcccccgactggctcaagcgcccgcaccgcgacaccctctcggtcgtcgtcggcggctgg
cgccccgagaccgggggcaaccggctcggcgccgtgctcgtcggccgcccgggcgacggc
ggctgggagttcgtgggtcgcgtcggcgccggtctcgccggacgtgccggcgcgagtctc
ctcacgcggctgcgtccgctggagcgagcggactctcccttcgtcagtccggtgccgcgc
gaggacgccgtcgggaccatctgggtcgagccagaggtcgtcctcgacgtcgccagcctg
ggccgtggtggtggcggtcggctgcggcagccctcccaccagagggtgcgcaccgacctg
accgccgccgacctgatggagacgagcgatggctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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