KEGG   Janthinobacterium lividum: G3257_11245
Entry
G3257_11245       CDS       T06723                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
jlv  Janthinobacterium lividum
Pathway
jlv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:jlv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    G3257_11245 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:jlv03019]
    G3257_11245 (rnr)
   03016 Transfer RNA biogenesis [BR:jlv03016]
    G3257_11245 (rnr)
Enzymes [BR:jlv01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     G3257_11245 (rnr)
Messenger RNA biogenesis [BR:jlv03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     G3257_11245 (rnr)
Transfer RNA biogenesis [BR:jlv03016]
 Prokaryotic type
  tRNA degradation factors
   G3257_11245 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1 OB_Dis3 CSD
Other DBs
NCBI-ProteinID: QKY02760
UniProt: A0A377QNT9
Position
2509518..2512067
AA seq 849 aa
MSQNTHTIPSREDILGIFRSVNAPLDPQSLGKTLQVHADSMDVLVRRLKAMERDGQLKSD
ASGVFSLADQSALVAGRVTSHRDGFGFVIPDDASADLFLPEKEMQKVLHGDKVMARIVGT
DRRGRPEGTIVEVTYRANTHVIGRLIQENGTWVVAPEDQRIGQDILVTGSVGKAKAGQIV
SVELTEQPMRFKQPVGKIVEVLGALDDPGMEIEIAVRKFNVPHVFSAAALKQAEKLPFEV
RAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRANCFRLIVAIADVSHYVKPN
DALDADALERSTSVYFPRRVIPMLPEKLSNGLCSLNPAVDRLTLVCDAVVSDKGELKAYQ
FYPAVIHSAARLTYDEVAAVLGNTKGPEAARRADILPHLQNLEAVYRALLKARTERGAID
FETTETYIVCNSAGKIEKIIPRTRNEAHKIIEECMLAANVCAADLLLRNKHPGTYRIHAS
PTKEKLTQVRTFLKQVGLNLTGGDTPSASDYQTLMQQIKARPDAALLQTMLLRSMQQAVY
SPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIKAILQGKKYEPKLSEKTVLNTNVSNA
TRKQQAKDKADGKPKKTDLTIWDALGVHCSANERRADEASRDVEAWLKCYFMQDKLGEEF
TGTITGVTTFGVFVQLDTLFVEGLVHVTELGTDYFQYDDARHELRGERTGKRYQLTDRLT
VQVARVDLETRKIDLRLVTDAELAGEDAPAKPNGAGKRKGEKKSMVKPGPATEQRHEIKA
SVNNGGKAGKGSGGRSNGAKAQAKPAAKAALKEAPKAAEPKRSKKPAAAPAAAAPRAAKT
VSKSSKNKR
NT seq 2550 nt   +upstreamnt  +downstreamnt
ttgagccaaaatacccacaccatccccagccgggaggacattctcggcatattccgcagc
gtcaacgcgcctctcgacccgcagtctctcgggaaaacgctgcaagtgcatgccgattcc
atggatgtcctggtccgtcgcctgaaggcgatggagcgcgacggccagctcaagtctgac
gccagcggtgttttcagcctggccgaccagagcgcgcttgtcgccggtcgcgttaccagc
caccgcgacggcttcggctttgtcattcccgacgacgccagcgccgacctgttcctgcct
gagaaagaaatgcagaaagtactgcatggcgacaaggtcatggcccgcatcgtcggcacg
gaccgccgcggccgcccggaaggcacgatcgtggaagtcacctaccgcgccaatacccac
gtcatcggccgcctgatccaggaaaacggtacctgggtcgtggcgccggaagaccagcgc
atcggccaggacatcctggtgaccggttcggtgggcaaggcgaaggccggccagatcgtc
agcgtcgagctgaccgaacaaccgatgcgcttcaagcagccggtcggcaagatcgtcgaa
gtgctcggtgcgctcgatgatcccggcatggaaattgaaattgccgtgcgtaaattcaac
gtgccgcacgtcttttccgccgccgccctcaagcaggctgaaaaactgcccttcgaagtg
cgcgccgccgacctgaaagaccgtgtcgacctgcgcgacgtgccgctcgttaccatcgat
ggcgaggacgcgcgcgatttcgacgatgccgtgtattgcgagcccgtcaagattggccgc
gccaactgcttccgcctgatcgtggcgattgccgacgtcagccattacgtgaagccgaac
gacgcgctcgatgccgatgcgctcgaacgcagcacgtccgtctacttcccgcgccgcgtg
atcccgatgctgccggaaaaactgtcgaatggcctgtgttcgctgaacccggccgttgac
cgtttgaccctcgtctgcgacgccgtcgtcagcgacaagggcgagctgaaggcttaccag
ttctacccggccgtcatccattcggccgcgcgcctcacgtatgacgaagtcgccgccgtg
ctgggcaacaccaagggacccgaagcggcacgccgcgcggacatcctgccgcacctgcaa
aacctggaagccgtctaccgcgccttgctgaaagcacgcacggagcggggcgccatcgac
ttcgagacgacggaaacgtatatcgtctgcaatagcgccggcaagatcgaaaagatcatc
ccccgcacgcgcaacgaagcgcacaagatcatcgaagagtgcatgctggcggccaacgtc
tgcgcggcggatctgttgctgcgtaacaagcaccccggcacctaccgcatccacgccagc
ccgaccaaggaaaagctcacgcaagtgcgcaccttcctcaagcaggtgggcctgaacctg
acgggcggcgacacgccatcggcatccgattaccagaccctgatgcagcagatcaaggcg
cgtcccgacgcggccctgctgcaaacgatgctgctgcgctcgatgcagcaagccgtctac
agcccggacaatatcggccacttcggcctggcgtacgaggcgtatgcccacttcaccagc
ccgatccgccgctatcccgacctgctgacgcaccgcgccatcaaggccattttgcaaggc
aagaaatacgagccgaagctgtccgagaagaccgtgctgaacacgaacgtgtcgaacgcc
acgcgcaagcagcaagcgaaggacaaggccgacggcaagccgaagaagacggacctgacg
atctgggacgcgctgggcgtgcattgctcggccaacgagcgccgcgccgacgaagcgtcg
cgcgacgtggaagcctggctgaagtgctacttcatgcaagacaaattgggcgaagagttc
accggcaccatcaccggcgtgaccaccttcggcgtcttcgtgcaattggacaccctgttt
gtcgaaggcctggtgcacgtcaccgagctgggcaccgactacttccagtacgacgatgcg
cgccatgaattgcgcggcgaacgcacgggcaagcgctaccagctgaccgaccgtctgacg
gtgcaagtggcgcgtgtcgatctggaaacgcgcaagatcgacctgcgtttggttaccgat
gcggaactggctggcgaagatgcgccagccaagccgaacggcgccggcaagcgcaagggc
gaaaagaaatccatggtcaagcccggtcctgcgaccgagcagcgccatgagatcaaggcc
agcgtcaacaacggcggcaaggccggcaagggttccggcggccgttccaatggcgccaag
gcgcaagccaagcctgcagccaaggcagcgctgaaggaagcccccaaggccgccgaacct
aagcgcagcaagaaaccagccgcggcacccgctgcggcggcaccacgtgcagcaaaaact
gtatcaaaatcaagcaagaacaagcgataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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