KEGG   Juglans regia (English walnut): 108993132
Entry
108993132         CDS       T05245                                 
Name
(RefSeq) uncharacterized protein LOC108993132 isoform X1
  KO
K06100  symplekin
Organism
jre  Juglans regia (English walnut)
Pathway
jre03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    108993132
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:jre03021]
    108993132
   03019 Messenger RNA biogenesis [BR:jre03019]
    108993132
Transcription machinery [BR:jre03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     108993132
Messenger RNA biogenesis [BR:jre03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     108993132
    U7-dependent histone pre-mRNA processing factors
     108993132
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N CRM1_C
Other DBs
NCBI-GeneID: 108993132
NCBI-ProteinID: XP_018823440
UniProt: A0A2I4EVM6
Position
15:18212675..18241268
AA seq 1324 aa
MAGAPRDQALSLLAAANNHGDLAVKMSSLKQAKDILISVDPSLATELFPYLADLQSSPES
LVRKLLIEVIEEIGSKAMELSSVLMPVLLALLSDGESIVARQCIISGTNLFSRVLEELAL
QYHRRGKIERWLEELWMWMTKFKDVVISIALEPGSVGRKLLALKLLETYVLYFTSDTNDF
EKPVTEAASRRAFNLSWLVGGHPILDPVVLMSEANRTLGILLNLLLSASSLPGSVTITVI
NCLAAIARKRPLHYSSVLSALLDFDLNLESVKGCHAASIQYSLRTAFLGFLRCTHPTIIE
SRDRLLGALRAMNAGDAADQVIRQVDKIMKNTERASRDVRLGKDDQLSSQLPISGDLSTK
RSFPLDNEEPANGHEVASKRFRYGPDIQSALPVQVIDSVHDSVTANGLSPVLHRQLSPVE
QMIAMIGALLAEGERGAESLEILISKVHPDLLADIVITNMKHLPKTPPPLTRLGNLPVTQ
QLGSLNTAPTNSEEPPDVSARAPLSSATATSSSLSDTPLVNNLSADSKRDLRRDPRRLDP
RRVVVPVGVPSNPIAEDIGAVQSEFDISISLSKPISLSVTTSLESPSTSLMSMIKSEDKI
LESPLVSGASQLTPALDKTEEIDLIPEVNPSSDPTPSPVNKVDEDSIEMKLSDVVVANGV
DTLSFLESDQHSPTVSNASASEDTCQDLPLLPSYVELTEEQERRVRKLAVEQIIESYEQP
CGTECSQTRMALLARLVAQIGTDDDVVMMLKEHVVIEYQRQKGHELVLHVLYHLHTLMIL
DSAETSSVAAVVYEKLLLAVAKSLLDSFPASDKSFSRLFGEVPLLPNSALKLLDDLCYAD
VTDHLGKDVRDIERVTQGLGAVWILILGRPVNRHSCLDIVLKCAVHSQDEIRARAIRLVA
NKLYQLSYISESIEQFAKNMLLAAVDQHISDIELSESGTEQRVKGEVESQETSTSGSQVS
EPGPSDNNFSRGMQSLLRNTSTMSLSEAQRLISLFFALCTKKPSLLQLVFNNYCQAPKAV
KQAFHRHIPILIRSLGSSCSELLHIISDPPQGSENLLTLVLEILTQDTTPSSDLIATVKH
LYETKLKDVTILIPMLSSLSKNEVLPIFPRLVDLPLEKFQMALAHILQGSAHMGPALTPA
EVLVAIHHIAPEKDGLPLKKITDACSACFEQRTVFTQQVLAKALSQMVDQTPLPLLFMRT
VIQAIDAFPTLVDFVMEILSKLVTRQVWRMPKLWVGFLKCVSQTQPHSFDVLLQLPPPQL
ESTLNKHSNLRGALADYATQPSIRTSIPRSTLAVLGLANDTHMQQPRVSSLHSTETSSSV
QGAT
NT seq 3975 nt   +upstreamnt  +downstreamnt
atggctggagctcccagagaccaggcgctctcccttctcgccgccgccaacaaccacggg
gatctggcggtgaagatgtcttctctgaagcaggccaaggacattctcatttccgtggac
ccttctttggccaccgagcttttcccctacttggccgatctccagtcctcccccgaaagc
ctcgtccgcaaattgctcatagaggtgattgaagagattggttcgaaagcaatggagctt
tcctctgtgcttatgccggtgttattggcgcttttaagtgatggcgagtctattgttgcg
aggcaatgtattattagtggcacaaatttattttctagggttctcgaagaattggcactg
cagtatcaccgtcggggtaaaattgagaggtggcttgaagagctttggatgtggatgact
aagttcaaggatgttgtcatttccattgcattggagcctggttctgttgggagaaagttg
ctggctttgaaattgttggaaacatatgttttatactttacatctgataccaatgatttt
gaaaagcctgtcacagaagcagcaagtaggcgggctttcaacctatcttggttggttggt
ggtcaccctattttggacccggttgtgcttatgtcagaagcaaacagaacacttggcatt
ctcttaaatttgttgctgtcagccagtagccttcctggttcggtgacgataactgttatt
aactgtcttgcagccatagctaggaagaggccactccactatagttctgttctttctgct
cttcttgattttgatctaaaccttgagtcggtcaaaggatgtcatgctgccagtatccag
tattccttaagaactgcttttttgggattcctaaggtgtactcatccaaccatcatagag
tcaagagatagattgcttggggctctccgagctatgaacgctggggatgctgctgatcag
gttatccggcaagttgataaaataatgaaaaacactgagcgtgcttcacgagatgttcgg
ctgggcaaggatgatcaattatcaagccaattgcccatatcaggtgatctatcgacgaaa
aggtcgtttcctctggataatgaagagccagctaatggtcatgaggtggcttccaagcgg
ttccggtatggtcctgacatccagtcggctttgccagttcaagtaattgattctgtgcat
gattcggttactgctaatggactatctcccgtattgcatcgccaactgagccctgtggaa
cagatgattgccatgattggtgctttgcttgcggaaggcgaaagaggtgctgaatcactt
gaaatccttatttcaaaagtacatcctgatctgctggctgatattgtcataacaaatatg
aagcacttgcctaagacacctccacctttaacaaggcttgggaacttgccagtaactcaa
caattgggctctctaaatactgctcctacaaattctgaagaacctccagatgtcagtgca
cgagcacctctttcttcagctactgcaactagttcttcattgtctgatacacctctggtc
aataatctctctgctgattcaaaacgtgatctgcgaagggatcctcgtcggctggatcca
agacgtgtagtagtccctgttggggtcccttccaatccaattgcagaggacattggagct
gtgcaatctgagtttgacattagtatttctttgagtaaacccatttcactttctgttact
accagtcttgaaagcccttctacatctctcatgtccatgatcaaaagtgaagataagatt
ttggaaagtccattggtttctggtgctagtcaattaactcctgctcttgataaaaccgag
gaaattgatctaatcccagaggttaatccctcttcagatccaacaccttctccagttaac
aaagttgatgaggactcaattgaaatgaagttgtcggatgttgtagtggcaaatggggtt
gatacattgtcttttctagaatctgatcagcattctcctactgtttcaaatgcatctgca
tctgaagacacctgtcaggatttacctctgctcccatcatatgtggaactgaccgaagaa
caggaaagacgtgtgagaaaattggcagttgaacaaataattgaatcatatgagcagcca
tgtgggactgagtgcagccagacgcgtatggcgttacttgctcgattggttgctcagatt
ggcactgatgatgacgttgttatgatgctgaaagaacatgttgtcattgagtaccaacgc
caaaaggggcatgagcttgttttgcacgtgttgtaccatctgcataccctcatgatcttg
gattctgcggaaacctcttcagtcgctgctgttgtgtatgaaaagctgctcttggctgtg
gccaaatctttgctggactcttttccagcttcagacaagtcctttagtagactttttggt
gaagtcccacttttgcctaactctgccttgaaactactagatgatctctgctatgctgat
gtcactgatcatctcgggaaagatgtacgtgatattgagcgtgttactcagggccttggt
gctgtctggattttgattttggggcgaccggttaatcggcattcctgcctggatatagtt
ttgaagtgtgctgttcattctcaagatgagatccgagccagagcaatccggctggtggcg
aacaagctttatcagctaagctacatatcagaaagtattgagcaatttgcaaaaaatatg
ttgttggctgctgtagatcagcatatttcagatatagaactttcagagtctggaactgag
caaagagtcaaaggggaggttgaaagccaagaaacatctaccagtggttctcaggtttca
gagcctgggccttctgacaataacttctcaaggggcatgcaatcattactgcgcaacact
tcaactatgtcattgtctgaagctcaaagactcatttctttgttttttgctttatgtaca
aagaaaccaagtcttctgcaacttgtatttaataattactgccaagccccgaaagctgtc
aagcaggcttttcatcgtcatataccgattcttataaggtccctagggtcatcttgttct
gaattgctccatatcatatctgatccgccacaaggaagtgaaaatcttttgacactggtg
ttggaaatattgactcaagatacaacaccttcttctgatctgatagcgactgttaaacat
ttatatgaaactaaactaaaggatgtcacaattcttattccaatgctgtcttcactttcc
aaaaatgaggttttacctatttttcctcggcttgttgaccttccgctagaaaagttccag
atggcacttgctcacatactgcagggttcagctcatatgggtccagctttgacacctgcg
gaagtattggttgctatccatcacatagctccagagaaagatggccttccacttaaaaag
ataacagatgcttgctcagcctgttttgagcaacgcacagttttcacgcaacaggtcttg
gccaaggcattgagccagatggtcgatcaaactcctctacctctactcttcatgagaaca
gtgattcaggcaattgatgcttttcctacactggttgattttgttatggagattctttcc
aaacttgtgactagacaggtgtggagaatgcctaagctttgggttggctttttgaaatgt
gtgtcgcaaacgcagccacattcttttgacgtgctgctacagttaccgccaccacaactt
gaaagcactctgaacaaacactctaaccttaggggtgcccttgctgattatgcaacccag
ccgagtattagaacttcaatacctagatcgacactagcggttcttggtctcgcaaatgat
acacacatgcaacaacctcgtgtgtcatcattgcattctactgaaacgagttcttcagtt
cagggagcaacttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (3)   
   Pfam (3)   
All databases (28)   

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