KEGG   Ketobacter alkanivorans: Kalk_11785
Entry
Kalk_11785        CDS       T05294                                 
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
  KO
K02470  DNA gyrase subunit B [EC:5.6.2.2]
Organism
kak  Ketobacter alkanivorans
Brite
KEGG Orthology (KO) [BR:kak00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:kak03032]
    Kalk_11785 (gyrB)
   03400 DNA repair and recombination proteins [BR:kak03400]
    Kalk_11785 (gyrB)
Enzymes [BR:kak01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     Kalk_11785 (gyrB)
DNA replication proteins [BR:kak03032]
 Prokaryotic type
  DNA Topoisomerases
   Kalk_11785 (gyrB)
DNA repair and recombination proteins [BR:kak03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      Kalk_11785 (gyrB)
SSDB
Motif
Pfam: DNA_gyraseB GyrB_insert DNA_gyraseB_C Toprim HATPase_c GyrB_hook HATPase_c_3
Other DBs
NCBI-ProteinID: AUM13063
UniProt: A0A2K9LLC9
Position
complement(2741968..2744394)
AA seq 808 aa
MSDDSNKTYDSSNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHC
SEVRVVIHPDESISVSDNGRGIPVDIHPEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGLH
GVGVSVVNALSTKLKITIRREGKVWEQNYTHGVPDAPLAAVGDSDKTGTELHFWPSEETF
TNIKFSHDILAKRLRELSFLNSGVRIVLKDERSGEENVFQYEGGLSAFVSYLNQNKTPLN
QVFYFDGHREDEGISVEVALQWNDSYQENIYCYTNNIPQRDGGAHLAGFRAALTRCLNTY
IEKEGLQKKHKVSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKGVVEQHMMEK
LQEYLLENPNDAKNICNKIIDAARARDAARRAREMTRRKGVLDIAGLPGKLADCQEKDPA
LSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSAEVGTLITAMGC
GIGKDEYNPDKSRYHSIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLYK
IKKGKQEQYLKDDLALESYLTQAALDGSSLHVNAEAPGISGSALESLVQEYRSTHKRIDR
LSRVYPAFVLQQLVYVPRLQEQDLTDASKVESWCAELHAHLVATTPATERYEVTLYEDTE
RHIFLPRILQVYHGVPTEHILSREFVVSDDYNSIATLGEKMATLIEEGAFIKRGERNYPV
DSFDQALEWLMTESKKGHTIQRYKGLGEMNPSQLWETTMDPETRRMLQVTIHDAIAADQI
FTTLMGDHVEPRRDFIETNALNVSNLDV
NT seq 2427 nt   +upstreamnt  +downstreamnt
atgtctgatgattcaaataaaacctacgattcctccaatatcaaggtactcaaagggcta
gacgcagtacgtaagcgcccaggcatgtacataggtgatacggatgatggcacaggtctg
caccacatggtgtttgaggtggtggataactcaatagacgaggcgctcgctggccattgc
tctgaagtgagagttgtcatccatccagatgaatcaatatcagtatccgacaatggccgt
ggtatcccggtggatatccaccccgaggaaggcagatccgccgcagaagtcatcatgacg
gtgctgcacgccggtggtaagttcgatgataactcctataaagtatcaggcggcctgcat
ggtgtgggggtttcagttgtaaacgcgctatccaccaagttaaaaatcaccattcgccgt
gaaggcaaggtatgggaacaaaactatacccatggcgtgccagacgcgccgttagcggct
gtgggggattccgacaaaaccggtacagaactgcacttctggccatcggaagagaccttt
accaacattaagttttcccacgatatattagccaaacgcctgcgtgaactgtcattcctg
aactctggtgtacgcatcgtattaaaagatgaacgcagtggtgaggaaaacgtattccaa
tacgaaggcggactgagtgccttcgtgtcgtacctgaatcagaataagacaccgcttaac
caggtattctattttgatggccacagagaagacgaaggcatatccgttgaagtggcgctg
cagtggaatgactcctatcaagagaacatctactgctacaccaataacatcccccagcgt
gacggtggcgcccacttggcggggtttagagcggcgttgacccgttgcttgaacacctat
atcgaaaaagaaggcctacagaagaagcacaaagtaagtaccagtggcgatgatgcccgt
gaaggcctgacagccattgtgtcggtgaaagtgccagacccgaagttctcatcacagacc
aaagacaagctggtgtcatctgaggttaagggcgttgttgagcagcatatgatggaaaaa
ctgcaggaatacctgttggaaaatccaaacgatgcgaagaatatctgtaataagatcatt
gatgcagcaagagcccgagacgccgcccgccgcgctcgtgagatgacccgccgtaaaggg
gttctggatatcgcaggcttgccaggaaaactggccgattgccaggagaaggatccagca
ttgtccgaactctacctggtggagggtgattctgcggggggatcggcaaagcaaggtcgc
aaccgtaagactcaggcaatactgccgctgaagggtaagatcctcaacgttgaaaaggca
cgatttgataaaatgttgtcatcggctgaagtaggaaccctgatcactgcaatgggttgt
ggcatcggcaaagatgaatacaacccagacaaatccagatatcactccatcattataatg
acggatgcggacgtggatggctcgcacatccgaacactgctactgacattctttttcagg
cagatgccagagctgattgagcgtggctatatctatatcgcccaaccgcccttgtacaaa
atcaaaaaaggtaaacaagaacaataccttaaggacgatctggcgttggaaagctatctt
acgcaagccgcgctggatggatcatcactgcatgtaaatgccgaggcgccaggcatcagt
ggatcagcattggaaagcttggtgcaggaatatcgcagcactcacaaacgcatcgatcgc
ctgtccagggtctaccctgcgttcgtgctgcaacaactggtatatgttcccaggttgcaa
gaacaggatctgacggacgccagtaaggtcgaaagctggtgtgctgagcttcatgcacat
ttagttgcgacaacaccggctaccgaacgctatgaagtaacgctctatgaagataccgag
cgtcatatattcctacccagaattctacaggtgtatcacggcgttccgacagagcatata
ttgtcccgtgaatttgtggtttccgatgactacaactcaatcgctacgttgggtgagaaa
atggcgaccttgatagaagaaggtgcgttcattaagagaggcgagcgcaattaccctgtg
gatagctttgatcaggcactggaatggctgatgactgagtcgaaaaaaggtcacaccata
caacgctacaaagggctaggtgaaatgaatccaagccagctgtgggaaaccacaatggat
cctgaaactcgcagaatgcttcaggttacgattcatgatgccatagcggcggatcagata
tttaccaccctgatgggcgatcacgtagagccaaggcgcgactttatcgagaccaatgcg
ctgaacgtgtccaacctggacgtgtag

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   RefGene (35)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (52)   

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