KEGG   Candidatus Kinetoplastibacterium desouzaii: CDSE_0309
Entry
CDSE_0309         CDS       T02465                                 
Name
(GenBank) formamidopyrimidine-DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
kde  Candidatus Kinetoplastibacterium desouzaii
Pathway
kde03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:kde00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    CDSE_0309
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:kde03400]
    CDSE_0309
Enzymes [BR:kde01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     CDSE_0309
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     CDSE_0309
DNA repair and recombination proteins [BR:kde03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     CDSE_0309
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS OspE A2L_zn_ribbon
Other DBs
NCBI-ProteinID: AGF46653
UniProt: M1L1K9
Position
complement(103917..104744)
AA seq 275 aa
MPELPEVEITKQGIRNRIFQKKLNKIVIRNNRLRWPIDNNTDEILKERIVLDCTRRSKYI
LIHFEHGIQFIHLGMSGSLQFSYLDKPLEKHDHVEWIFEEFALRLNDPRRFGAVIWHPYE
NGPIELHPLINKLGIEPFSNDFTGEYLYNKFKINNTNIKQALLNGKIVVGIGNIYASEIL
FKSRINPFLKTKYLSINQCEELAQIIIETLNEAIASGGSSIKNFVDSNGKQGSYIEKYAY
VYNREGKQCKICKKNDIIKIYQNNRSTYYCPLCQD
NT seq 828 nt   +upstreamnt  +downstreamnt
atgcctgaactacctgaagtagaaattactaaacaaggaataagaaatagaatattccag
aaaaaactaaacaaaattgtcattagaaataatcgtctacgttggcctatagataataat
acagacgaaatactaaaagaaagaatagttttagactgcaccagaagaagtaaatatata
ttaattcattttgaacatggaattcaatttatccatcttggaatgtcaggatcattacaa
tttagctacttagacaaaccactagaaaaacatgatcatgtagagtggatttttgaagaa
tttgctctaagattaaatgatcctagacgtttcggtgcagttatatggcacccatatgaa
aatggcccaatagaattacatccgttaattaataaattaggaatagaaccattttccaat
gattttactggagaatatctttataataaatttaaaatcaataatactaatataaaacaa
gcattactaaatggaaaaatagtagtaggtataggaaatatatacgcatcggagatttta
tttaaatccagaattaacccattcttaaaaaccaaatatttgtcaatcaatcaatgcgaa
gaattagcacaaataattatagaaactctaaatgaagcgattgcatctggaggaagctca
ataaaaaacttcgttgactccaacggcaaacaaggatcatacatagaaaaatatgcttat
gtatataatcgagaaggtaaacaatgcaaaatatgcaaaaagaatgacattataaaaatc
tatcagaataatagatctacttactattgccctttatgccaagattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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