KEGG   Dokdonia sp. 4H-3-7-5: Krodi_1563
Entry
Krodi_1563        CDS       T01484                                 
Name
(GenBank) Holliday junction DNA helicase RuvB
  KO
K03551  holliday junction DNA helicase RuvB [EC:5.6.2.4]
Organism
kdi  Dokdonia sp. 4H-3-7-5
Pathway
kdi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:kdi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Krodi_1563
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:kdi03400]
    Krodi_1563
Enzymes [BR:kdi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Krodi_1563
DNA repair and recombination proteins [BR:kdi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Krodi_1563
    RecFOR pathway proteins
     Krodi_1563
SSDB
Motif
Pfam: RuvB_N AAA_lid_4 RuvB_C AAA AAA_22 AAA_5 AAA_3 Mg_chelatase AAA_14 nSTAND3 AAA_16 Rad17 NB-ARC RNA_helicase AAA_PrkA AAA_28 AAA_18 AAA_33 TsaE Sigma54_activ_2 AAA_24 AAA_17 NTPase_1 RsgA_GTPase bpMoxR ABC_tran NACHT AAA_11
Other DBs
NCBI-ProteinID: AEE19546
UniProt: F4AVT7
Position
1772688..1773710
AA seq 340 aa
MNEHLDPTNEGFSREDVDVEKALRPLSFDDFAGQDQVLENLKIFVQAANLRGEALDHTLF
HGPPGLGKTTLANILANELDVNIKITSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSP
IVEEYLYSAMEDYRIDIMIETGPNARSVQIDLAPFTLVGATTRSGLLTAPMRARFGISSR
LQYYTTELLTTIVERSSSILGVPISMEAAVEIAGRSRGTPRIANALLRRVRDFAQIKGNG
SIDIAIAKYSLEALNVDAHGLDEMDNKILATIIDKFKGGPVGITTLATAVSESAETIEEV
YEPFLIQQGFIMRTPRGREVTEEAYRHLGRVKGPVQGGLF
NT seq 1023 nt   +upstreamnt  +downstreamnt
atgaatgaacatttagaccccacaaatgaaggtttttctagagaagatgtagatgtcgaa
aaggcattgagacctctgtcttttgatgactttgcaggacaagatcaggtgctggaaaat
cttaagatatttgttcaagctgcaaatcttagaggtgaggcgctagatcatacattgttt
catggtcctccaggtttaggtaaaaccacccttgcaaatattcttgccaatgaacttgat
gtaaatatcaagattacatcaggtcctgtactagacaagccaggagatcttgcgggttta
cttaccaatcttgatgagagagatgtgcttttcattgatgagatacatagattgagtccc
atagtagaagagtatctatactcagctatggaggattatcgtatcgacattatgatcgag
accggtcctaatgctcgaagcgtacagatcgatcttgctccatttacattagtgggtgca
acaactcgttctggactacttacagcgcctatgcgagcacgttttggtatctcaagtaga
ttacaatattacactacggaactgcttactactatcgttgagcgtagttcgagcatatta
ggggtgcctatctccatggaagccgctgttgagattgcaggaaggagtagaggaactcct
cgtattgcaaatgcgttgttgagacgtgtgcgcgattttgctcagatcaagggtaatgga
agtatagatattgctattgcaaaatacagtcttgaggcattaaatgtagatgcacacgga
cttgatgagatggataataaaatacttgcgaccattatagataagtttaagggtggtcct
gtggggattactacacttgcaactgccgtatctgagagtgcagagactattgaggaagtc
tacgagccattcctaatacaacagggttttataatgcgtacacctagaggtagagaagtg
accgaagaagcttataggcatttaggtcgtgtaaaagggcctgtgcaaggcggactgttt
taa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (28)   
   Pfam (28)   
All databases (53)   

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