KEGG   Kerstersia gyiorum: EHF36_17175
Entry
EHF36_17175       CDS       T05924                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
kgy  Kerstersia gyiorum
Pathway
kgy03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:kgy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    EHF36_17175 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:kgy03021]
    EHF36_17175 (rpoB)
   03400 DNA repair and recombination proteins [BR:kgy03400]
    EHF36_17175 (rpoB)
Enzymes [BR:kgy01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     EHF36_17175 (rpoB)
Transcription machinery [BR:kgy03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     EHF36_17175 (rpoB)
DNA repair and recombination proteins [BR:kgy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      EHF36_17175 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2
Other DBs
NCBI-ProteinID: QBR42172
Position
complement(3922354..3926469)
AA seq 1371 aa
MPYSFTEKKRIRKNFAKREDVQNVPYLLATQLQSFRTFLQSEVPSSERKDEGLQAAFSSI
FPIVSHNQMARLEFVSYTLGEPVFDVKECQQRGLTYASPLRAKVRLVLLDREVSKPTVKE
VKEQEVYMGEIPLMTDTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV
IPYRGSWLDFEFDPKDLLFFRVDRRRKMPVSILLKAIGMTPESILAYFFDFDHFDLKSEG
GMMEFVPERWKGEVARFDITDREGTVLVEKDKRINAKHLRDIAKAGIEWISVPEDFLVGR
VLAKNIVDPDTGEVLANANDEITESLLENLRSAGVPSIQTLYTNDLDRGPYISMTLRTDD
TADQNAARVAIYRMMRPGEPPTEEAVEALFNRLFYSEESYDLSRVGRMKVNSRLNRENVL
EGPTTLTNEDIVETIKLLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETPYRKV
ENGRVTDTIDYLSAIEENRYVIAQANARLDEENRFVDDLVACREDGETMMTSGANVHYMD
VAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVDSGT
TVQARRGGIVDYVDAERVVIRVNDEENIAGEVGVDIYNLIKYTRSNQNTNINQRPIVRRG
DLVARGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISENVVANDRYTSVHIE
ELTVVARDTKLGAEEITRDISNLPEVQLNRLDDSGIVHIGAEVRADDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIVRDKRAQSIIDDELR
RYRQDLNDQLRIVENDTFDRIEKLLVGKTVNGGPRKLAKGSVLSKEYLADLTDRWQWFDI
RLADEQHALVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRL
QPGDKMAGRHGNKGVVSRILPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHLGWA
AKGLGHRVAEMLADERKIEVAKLRAFFDKVYNGSGTPAALDTLTDDEIITMAYNLKNGVP
LATPVFDGASEEDIEQMLRLAYPDEIAQKLRLTDSRTQAWLIDGRTGEPFERPVTVGYMH
YLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEML
TVKSDDINGRTKIYENIVKGDHTIDAGMPESFNVLVKEIRSLAIDMDLERN
NT seq 4116 nt   +upstreamnt  +downstreamnt
atgccttactcgtttaccgaaaaaaagcgcatccgcaaaaattttgccaagcgggaagac
gttcagaacgtgccgtatctgctggcaacgcagctgcagtccttccggacttttctgcag
tcggaagtgccctcatccgaacgcaaggatgaaggcctccaagccgctttttcttctatt
ttcccgatcgtcagccacaatcagatggctcgtctggaattcgtcagctacacgctcggc
gaaccggtcttcgacgtcaaggaatgccagcaacgtggtctgacctatgcgtcgccgctg
cgcgccaaagtccgcctggtgctgctcgaccgtgaagtgagcaaaccgacagtcaaggaa
gtgaaggaacaggaagtctacatgggcgaaattccgctcatgaccgacaccggttcgttc
gtcatcaacggtaccgagcgcgtcatcgtgtcgcagctgcaccgttcgcctggcgtgttc
tttgagcacgaccgcggcaagactcacagttccggcaagctgctgttctctgcccgcgtg
attccttaccgtggctcctggctggacttcgagttcgaccccaaggatctgctgttcttc
cgcgttgaccgccgccgcaagatgccggtgtcgatcctgctgaaggcgatcggcatgacg
ccggaatccatcctggcctacttcttcgatttcgaccacttcgacctgaagagcgaaggc
ggcatgatggagttcgtgccggaacgctggaagggtgaagtggcccgtttcgacatcacc
gaccgcgaaggcacggtgctggtcgagaaggacaagcgcatcaatgccaagcatctgcgc
gatatcgccaaggcgggtatcgagtggatttccgtgcccgaggacttcctcgtgggccgt
gtgctggccaagaacatcgttgatccggataccggcgaagtgctggccaacgccaacgac
gaaatcaccgagagcctgctggaaaacctgcgcagcgctggcgtgccgtccatccagacg
ctgtacaccaacgacctggatcgcggcccctacatctcgatgacgctgcgtaccgacgac
actgcggaccagaacgccgcccgcgtcgcgatctaccgcatgatgcgtcctggtgagccg
cctacggaagaagccgtcgaggccctgttcaaccgtctgttctacagcgaagagtcgtat
gacctgtcgcgcgtgggccggatgaaggtcaacagccgcttgaaccgcgaaaacgtgctg
gaaggcccgaccacgctgaccaacgaagatatcgttgaaaccatcaagctgctggtcgag
ctgcgtaacggccgtggccagatcgacgatatcgaccacttgggcaatcgtcgcgtgcgc
tgtgtgggtgaactggccgagaaccagttccgcgccggcctggtgcgcgtcgagcgcgcc
gtcaaggaacgtctgggccaggccgagaccgaaaacctgatgccgcacgacctgatcaac
tccaagccgatttccgcggcgatcaaggagttcttcggttccagccagctgtcgcagttc
atggaccagaccaacccgctgtcggaaatcacgcacaagcgtcgtgtttccgctctgggc
ccgggcggtctgacgcgtgagcgcgccggcttcgaagtgcgcgacgtgcacccgacccac
tacggccgcgtgtgtcccatcgaaacgcctgaaggtccgaacatcggcctgatcaactcg
atggctctgtacgcccgcctgaacgaatacggcttcctggaaacgccgtatcgcaaggtc
gagaacggccgcgtgaccgacacgatcgactatctgtcggccatcgaggaaaaccgttac
gtcatcgctcaggccaacgcgcgcctggacgaggaaaaccgtttcgtcgacgatctggtt
gcctgccgcgaagatggcgaaaccatgatgacgtccggtgccaacgtgcactacatggac
gttgccccgtcgcagatcgtgtccgtggctgcctcgctgattccgttcctggagcatgat
gacgccaaccgtgcactgatgggcgccaacatgcaacgccaggccgtgccttgcctgcgt
ccggagaagcctctggtcggtaccggcatcgagcgcaccgtcgccgttgactcgggtacg
accgtgcaggcccgccgtggcggtatcgtcgattacgtcgatgccgagcgcgtggtgatt
cgcgtcaatgatgaagaaaacatcgctggcgaagtcggcgttgatatctacaacctgatc
aagtacacgcgttccaaccagaacaccaacatcaaccagcgccccatcgtgcgccgtggt
gacctggtggctcgtggcgacgtgctggctgatggcgcttcgaccgatctgggcgaactg
gcgctgggccagaacatgctgatcgcgttcatgccctggaacggctacaacttcgaggat
tcgatcctgatctccgagaacgttgttgccaatgatcgctatacctcggtgcacatcgag
gaactgacggtcgtggcgcgcgataccaagctgggtgcggaagaaatcacccgcgatatc
agcaacctgcccgaagtgcagttgaaccgcctggatgattccggcatcgtgcacatcggc
gcggaagtccgtgccgatgacgtgctggtcggcaaggtgacgcccaagggcgaaacccag
ctgacgccggaagaaaagctgctgcgcgcgattttcggcgagaaggcttccgacgttaag
gacacctcgctgcgcgtgccgtccggcatggtcggcaccgtcatcgacgtgcaggtgttc
acgcgtgaaggcatcgtgcgcgacaagcgcgcccagtccatcatcgacgacgaactgcgc
cgctatcgccaggacctgaacgaccagctgcgtatcgtcgaaaacgataccttcgaccgt
atcgagaagctgctggtcggcaagaccgtcaacggcggtccgcgcaagctggccaagggt
tccgtgctgagcaaggaatacctggctgacctgaccgatcgctggcagtggttcgacatc
cgcctggccgacgagcaacatgcgctggtgctggagcaggccaaggaatcgctggagcag
aaacgccaccagttcgacctggccttcgaagaaaagcgcaagaagctgacgcaaggcgac
gagctgcctccgggcgtgctgaagatggtcaaggtctacctggccgtcaagcgccgcctg
cagcctggcgacaagatggcaggccgtcacggtaacaagggtgtggtgtcccgcatcctg
ccggtggaagacatgccccacatggctgacggtacgccggccgacatcgttctgaacccg
ctgggcgtgccttcgcggatgaacgtgggtcaggtgctggaagttcacctgggctgggct
gccaagggcctgggccatcgcgtggccgagatgctggccgacgagcgcaagatcgaagtg
gccaagctgcgcgccttcttcgacaaggtgtacaacggttccggtacgccggccgcgctg
gacaccctgacggatgatgagatcatcacgatggcgtacaacctgaagaacggcgtgcct
ctggcaacgccagtgttcgacggcgccagcgaggaagacatcgaacagatgctgcgtctg
gcctatccggacgagatcgcgcagaagctgcgcctgaccgacagccgcacgcaagcgtgg
ctgatcgacggccgcaccggcgaaccgttcgagcgtcccgtcaccgttggctacatgcac
tatctgaagctgcaccacttggtcgatgacaagatgcacgcgcgttcgaccggcccgtac
tcgctggtgacccagcagccgctgggtggtaaggctcagttcggtggccagcgtttcggg
gagatggaagtgtgggcgctggaagcctatggcgcctcctacaccctgcaggaaatgctg
acggtgaagtccgacgatatcaacggccggaccaagatctacgaaaacatcgtcaagggc
gatcacaccatcgacgccggcatgcccgagtcgttcaacgtgctggtcaaggaaattcgt
tccctggccatcgacatggatttggagcgtaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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