KEGG   Phytobacter ursingii: AB182_04355
Entry
AB182_04355       CDS       T03950                                 
Symbol
recD
Name
(GenBank) exonuclease V subunit alpha
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
kin  Phytobacter ursingii
Pathway
kin03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:kin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    AB182_04355 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:kin03400]
    AB182_04355 (recD)
Enzymes [BR:kin01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     AB182_04355 (recD)
DNA repair and recombination proteins [BR:kin03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     AB182_04355 (recD)
SSDB
Motif
Pfam: RecD_N AAA_19 AAA_30 Helicase_RecD UvrD_C_2 Viral_helicase1 SH3_13 AAA_11 UvrD-helicase AAA_22 SLFN-g3_helicase AAA_16 PhoH nSTAND3 MukB UvrD_C AAA_28 SRP54 DEAD FtsK_SpoIIIE T2SSE CbiA TrwB_AAD_bind Bcl-2 NTPase_1 DUF6079 AAA ATPase
Other DBs
NCBI-ProteinID: AKL10602
Position
196461..198293
AA seq 610 aa
MKLRTLLQQAAALKILRPLDVQFALTVASDDEPAVMLAAAMLSFDAGEGHVCLPLSRLAP
ENLPARAHPLLASLYEEVGHPADWRKTLLASPAVSEGEAATPMILVGERLYLNRMWCNEC
SIAAFFAKVNHPLAVDENRLRQALDNLFQPSDDINWQKVAAAVALTRRVSVISGGPGTGK
TTTVAKLLAALVQMADGSRCRICLAAPTGKAAARLTESLGAALRQLPLTDKQKATLPDEA
STLHRLLGALPGSQRLRYHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPQHARVIFLGD
RDQLASVEAGAVLGDICAWVNKGFTPERAAQLSRITGTTVPAGEGASASALRDSLCLLQK
SYRFGSDSGIGQLAAAVNRGDKAAASAVLGQGFSDIENKHLQSTEDYQSMIDDALAGYGR
FLGLVRDGAQPQEVLTAFGEYQLLCALREGPFGVSGLNDRIEQALIRQRRISRPAHARWY
HGRPVMITRNDASLGLFNGDIGIALDQGQGIRVWFPLPDGSLKSVQPSRLPEHDTAWAMT
VHKSQGSEFDHAALILPGQIVPVVTRELVYTAITRAKKRLSLYADERILAQAIATRTERR
SGLNAIFETM
NT seq 1833 nt   +upstreamnt  +downstreamnt
atgaaactgcgtacgttattgcagcaggccgcagcgctaaaaatattacgccctctggat
gtgcagttcgccctgaccgtggccagcgatgatgaacctgcggtgatgctggcggcggcg
atgctgagctttgacgccggagaagggcatgtctgcttaccgctttcccgtttagcgccg
gaaaacctgcctgccagagcgcatccgttactggcctctctttatgaagaggttggtcat
cctgcggactggcgaaagacgttactggcctcgcctgccgttagtgagggggaggcggca
acgccgatgatcctcgtgggtgagcggctctacctcaatcgtatgtggtgcaatgaatgc
agtattgccgccttttttgctaaggttaatcaccccctggcggtagatgaaaaccgcttg
cggcaggcgctggataacctgtttcaaccttcggatgatatcaactggcagaaggtggcg
gcggcggttgcgctgactcgccgcgtgtcggtgatttctggtgggccgggtaccgggaaa
accacgacggtggcgaagctgcttgccgcgctggtgcaaatggccgatggttcacgctgt
cgcatttgtcttgccgcaccaacagggaaggcagccgctcgtctgacggaatcattaggt
gcagcgcttcgtcagttgccgttgactgacaaacaaaaggcgacgctgcctgacgaagcc
agtaccctgcatcgtcttctgggcgcgctacccggtagccagcgcctgcgttatcacgcg
ggcaatccgttgcatctggatgtgctggtggtggatgaagcctccatgattgacctgccg
atgatgtcacggctgattgatgcactaccgcaacatgcgcgggtcattttcctcggagac
cgcgaccagttagcctcagtggaggccggggcggtactcggagatatttgcgcctgggtc
aataaagggtttactccggagcgcgctgcacagttgtcgcgaataacaggaacgaccgta
cccgctggagaaggcgcttcggccagtgcgctacgtgacagcctgtgcctgctgcaaaaa
agctatcgctttggcagcgattcgggcatcgggcaactggcggcggcggttaatcgtggc
gataaagcggcggcaagcgcggtgctgggccagggctttagcgatatcgaaaataaacac
ctgcaaagtacagaagattatcagagcatgattgatgatgcgctggcaggctatggacgt
tttctcgggctggttcgcgatggcgcgcagccgcaagaggtccttaccgcttttggtgaa
tatcagttgctgtgtgcgttgcgtgaagggccatttggcgtaagtgggctgaacgatcgt
atcgagcaggcgctgattcggcagcggcggatttcacgcccggcgcatgcgcgctggtat
cacggcaggccggtcatgatcacgcgtaatgatgcatcgctggggctgtttaatggcgat
attggtattgcgctcgatcaggggcagggcatccgtgtctggttcccgttacctgacggc
agcctgaaatccgtacagcccagccgcttaccggagcatgacaccgcctgggcgatgacg
gtacataaatcgcagggatcggagtttgatcatgcggccctgattttgccgggccagatt
gtgccagtggtgacaagagaactggtctataccgcgattacccgtgcgaaaaagcggctc
tcgctgtatgccgatgaacgtattctggcgcaggccattgccacgcgtaccgaacggcga
agcggactgaatgccatttttgaaacgatgtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (28)   
   Pfam (28)   
All databases (44)   

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