KEGG   Pantoea rwandensis: LH22_11890
Entry
LH22_11890        CDS       T03331                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
kln  Pantoea rwandensis
Brite
KEGG Orthology (KO) [BR:kln00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:kln03032]
    LH22_11890
   03400 DNA repair and recombination proteins [BR:kln03400]
    LH22_11890
Enzymes [BR:kln01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     LH22_11890
DNA replication proteins [BR:kln03032]
 Prokaryotic type
  DNA Topoisomerases
   LH22_11890
DNA repair and recombination proteins [BR:kln03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      LH22_11890
SSDB
Motif
Pfam: Topoisom_bac Topo_Zn_Ribbon TOP1_ZnF Toprim zf-C4_Topoisom DUF2399
Other DBs
NCBI-ProteinID: AIR86125
Position
2527245..2529842
AA seq 865 aa
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSTARKTTDGEKAKTGKKVK
KDEKAALVSRMGVDPWHGWEADYQILPGKEKVVAELKSLAADADHIYLATDLDREGEAIA
WHLREVIGGDDKRFSRVVFNEITKNAIRQAFEKPGELNIERVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREHEIKAFVPEEYWEIDADFSTPKGDALGMQVTH
QGDKAFRPVNREQTYAAVSVLENARYEVLDREDKPTSSKPSAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGHITYMRTDSTNLSQDAVAMARGFVEKSFGKKYLPESPITYASKEN
SQEAHEAIRPSDVNIQAEQLKDMEADAQKLYQLIWRQFVACQMVPAQYDSTTLTVGAADF
KLRAKGRTLRFDGWTKVMPALRKNDEDLTLPPVNVGDMLDLKELMPSQHFTKPPARFSEA
SLVRELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEQNFRELMNY
DFTARMEDSLDQVANNEAQWKAVLDSFFSDFSQQLGQAEKEPEEGGMQPNQMVLTSIDCP
TCSRQMGIRTASTGVFLGCSGYALPPKERCKQTINLIPENEVLNVLEGDDAETNALRARR
RCQKCGTAMDSYLIDNQRKLHVCGNNPECDGYEIEQGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMACTNDECKNTRKILRNGEVAPPKEDPVPLPELACEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELQRFADRLPEKLKYLAEAPAADPEGNKTLVRFSRKTKQQYV
SSEKEGKATGWSMFYIDGKWQEAKK
NT seq 2598 nt   +upstreamnt  +downstreamnt
atgggtaaagcactcgtaatcgttgagtccccggcaaaggccaaaacaatcaataaatac
ctcggtaatgactacgtggtgaaatccagcgtcggtcatatccgtgatttgccgaccagc
ggttcaactgcccgtaaaactaccgacggggaaaaggcgaaaacaggaaaaaaggttaag
aaggatgagaaggccgcattggtcagtcgcatgggtgtcgatccctggcatggctgggaa
gcggactatcagattctgccgggtaaagaaaaagtcgtagccgaactgaaaagcctcgcc
gccgatgctgaccacatctacctcgcaacggaccttgaccgcgaaggggaggccattgcc
tggcacctgcgggaagtgatcggtggcgatgacaagcggtttagccgcgtggtgttcaac
gaaatcaccaaaaatgcgattcgccaggcgtttgaaaaaccgggcgaactgaatattgag
cgtgttaatgcacagcaggcgcgtcgctttatggaccgcgtggtgggctacatggtttcc
ccgctgctgtggaagaaaattgcccgtggtttgtctgcgggtcgtgtacagtctgtggct
gtgcgactggtggttgagcgcgagcacgaaattaaagcgttcgtgccggaagagtattgg
gagatcgatgcggatttctctacgccgaaaggcgacgcgctggggatgcaagtcacgcat
cagggcgacaaagcgttccgtccggttaatcgcgagcaaacttatgctgcggtatccgtg
ctggaaaacgcgcgttacgaagtgctggatcgtgaagacaaaccgaccagcagtaaaccg
tctgcgccttttattacctcgacattgcaacaagcggcgagtacacgtctcggttttggc
gtgaagaaaaccatgatgatggcgcaacgtctctacgaagcgggtcacatcacctatatg
cgtactgactccaccaacctgagtcaggatgcggtggcgatggcgcgcggctttgtcgag
aagagttttggtaaaaagtatctgccagaatcaccgatcacctacgccagtaaagagaat
tcgcaggaagcacacgaagcgatccgtccttcggatgtcaatattcaggcagaacagctg
aaagatatggaagctgatgcgcagaaactgtaccagctgatctggcgtcagtttgtggcc
tgccagatggtgcctgcgcagtatgactccaccaccctgacggtgggtgcagcagacttt
aaactgagagcgaaaggccgcaccttgcgtttcgatggctggacaaaagtgatgccagcc
ctgcgtaaaaacgatgaagacttgacgctgccaccggtcaatgtcggcgatatgcttgac
ctgaaggagctgatgccaagccagcacttcaccaagccgccagcccgcttcagcgaagct
tccttagtccgtgagttggaaaaacggggtatcggccgtccatcgacctatgcctcaatt
atttccaccattcaggatcgcggttacgtgcgggtagaaaaccgccgcttctatgctgaa
aagatgggtgaaatcgtcaccgatcgtctggaacagaatttccgtgagctgatgaactat
gacttcaccgcgcgcatggaagacagccttgaccaggtcgccaataacgaagcgcagtgg
aaagcggtgctggattccttcttcagcgatttcagccagcagttaggtcaggccgagaaa
gagccagaagagggcggcatgcagccgaaccagatggtgctgacctcgatcgactgcccg
acctgtagccgccaaatgggtatccgtaccgccagtaccggtgtgttcctcggctgctcc
ggttatgcgctgccacccaaagaacgctgcaaacagaccatcaatctgattccggaaaac
gaagttcttaacgtactggaaggcgatgatgctgaaaccaatgcgttacgtgcccgtcgt
cgttgccagaagtgtggcaccgcgatggatagctacctgatcgacaatcagcgtaagctg
cacgtctgtggtaacaacccggaatgtgacggctacgaaatcgaacagggcgaattccgc
atcaaaggttatgacggcccgatcgtagagtgtgaaaagtgtggttctgaaatgcacctg
aaaatggggcgcttcggtaaatacatggcctgcaccaacgacgagtgtaaaaacactcgc
aagattctgcgcaatggtgaagttgcaccaccgaaggaagatccggtgccgttgcctgag
ctggcgtgtgaaaagtcagatgcctactttgtattgcgtgacggtgcggcaggggtattc
ctggcggccaacaccttcccgaaatcgcgtgaaacgcgtgcgccgctggtggaagagctg
caacgttttgctgaccgtctgcctgagaagctgaaatacctggcggaagcgccagcagcg
gatccggaaggcaataaaacgttagtgcgttttagccgtaaaactaagcagcagtatgtt
tcctccgagaaggagggcaaagcgactggctggtcgatgttctatatcgacggtaagtgg
caggaagcgaagaagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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