KEGG   Klebsiella huaxiensis: DA718_00715
Entry
DA718_00715       CDS       T05915                                 
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
klw  Klebsiella huaxiensis
Pathway
klw03030  DNA replication
klw03410  Base excision repair
klw03420  Nucleotide excision repair
klw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:klw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DA718_00715 (ligB)
   03410 Base excision repair
    DA718_00715 (ligB)
   03420 Nucleotide excision repair
    DA718_00715 (ligB)
   03430 Mismatch repair
    DA718_00715 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:klw03032]
    DA718_00715 (ligB)
   03400 DNA repair and recombination proteins [BR:klw03400]
    DA718_00715 (ligB)
Enzymes [BR:klw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     DA718_00715 (ligB)
DNA replication proteins [BR:klw03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     DA718_00715 (ligB)
DNA repair and recombination proteins [BR:klw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     DA718_00715 (ligB)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DA718_00715 (ligB)
   MMR (mismatch excision repair)
    DNA ligase
     DA718_00715 (ligB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DA718_00715 (ligB)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH DUF3701 HHH_5 RNA_ligase HHH_2
Other DBs
NCBI-ProteinID: QBG05799
Position
156661..158337
AA seq 558 aa
MHKGIWGLVLWMLVGYGQAACPTWSQTRAEQEIKRLSQQMNEWKNAYWHQGKSVVSDEVY
DQLAARLSYWQRCFVSDPPAHDELPPLKGNARHPVAHTGVRKLADEASVARWMRGKTDLW
VQPKVDGVAVTLVYRQGRLTQAISRGNGLAGEDWTARVLQIPSIPKVVGTELANSVLQGE
LFLHNAGHVQKQMGGMNARAKVAGMMMRQDVAAELDKLGVFIWAWPDGPADMNQRQALLR
QSGFLHSALFSHSVANAQQVGQWRQRWFTSPLPFATDGVVVRQGQESAGRFWVPGQADWV
IAWKYPPASRVMEVRGISFSIGRSGKIAVVAQLTPQHLDDKRVQRVSVGSVSRWQNLDIG
IGDQLQISLAGQGIPRIDSVVWRTAQRNKPQPPPSRFNALSCFFATPECAEQFLSRLVWL
SSRSILDIDGAGETLWRTVHDARRMDNLFSWLAFTPEQLQTIPGISALRGQQLWHQFNLA
REQPFLRWIQAMGIPIPKTAFSEMAKDDWQQLQDRNEEQWRRLPGIGAERARQLVAFLHN
PDVAALAKWLSGQRIAGF
NT seq 1677 nt   +upstreamnt  +downstreamnt
atgcataagggaatttgggggctggtgttatggatgttggtgggatacgggcaggcagcc
tgcccaacgtggtcacagaccagggctgaacaggaaattaaacgtctcagtcagcagatg
aacgagtggaaaaacgcttactggcatcaaggtaagagcgtagtcagcgatgaggtctac
gaccagcttgcggcgcgactgtcctactggcaacgctgttttgtcagtgacccccccgct
cacgatgaacttccgccattaaagggcaatgcccggcatccggttgctcacactggcgtg
cgtaaactggcggatgaagccagcgttgcccgctggatgcgtggcaaaaccgacctctgg
gtgcagccaaaagtggatggcgtagcggttacgctggtctatcggcaagggcgtttgacg
caggcaatcagtcggggaaacggattggcgggagaggactggacggccagggtattacag
atcccttccatacctaaggtggttggtactgaacttgctaacagcgtgttacagggcgag
ctgttcctgcataacgcggggcatgtgcaaaagcagatgggtggtatgaacgcgcgggca
aaagtcgcgggcatgatgatgagacaggacgttgcggccgagcttgataagctgggcgtg
tttatctgggcatggcctgatggcccggcagatatgaatcagcgccaggcgttgttgcgc
cagagcggctttcttcatagcgcacttttttcgcattctgttgctaatgcgcagcaggtt
gggcagtggcgtcaacgttggttcacttcaccactgccttttgctactgatggcgttgtg
gtgcgccaggggcaagagtcagccgggcgtttctgggtgccggggcaggctgattgggtg
attgcgtggaaatatccgcccgcgtcacgggttatggaggttcgcggtatcagctttagc
atcgggcgcagcggtaaaatcgccgtggtagcgcagctcacgccgcagcacctggatgat
aagcgcgtgcagcgggtgagcgtcggctcggtatcccgttggcaaaatcttgatatcggc
attggcgatcagctgcaaatcagcctcgccgggcagggtataccgcgcatcgattcggtg
gtctggcgtaccgctcagcgtaataaaccccagccccctccatctcgtttcaatgcatta
agctgttttttcgccacccctgagtgcgcagagcagtttctctcacgactagtctggctc
tcatcccgatcgatccttgatattgacggcgctggagagacattgtggcgcactgtacac
gatgcccgacgcatggataatctcttttcatggctggcgtttacaccagagcaactgcaa
acaattccgggaatatctgcactgcgcgggcagcagttgtggcaccagtttaatctggcg
cgtgagcagccctttttgcgctggatacaggctatggggatacccatcccaaaaacagcg
ttttcagagatggcgaaggacgactggcagcagttacaggatcgaaacgaagaacagtgg
cgacgtttacctggaattggggcagaaagggcgcggcagctagtggcttttttacataac
ccggatgttgccgcgctggcgaagtggctcagcgggcaacgaattgcagggttctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (7)   
   Pfam (7)   
All databases (25)   

Download RDF
DBGET integrated database retrieval system