KEGG   Kryptolebias marmoratus (mangrove rivulus): 108238173
Entry
108238173         CDS       T05608                                 
Symbol
dhx40
Name
(RefSeq) probable ATP-dependent RNA helicase DHX40
  KO
K18711  ATP-dependent RNA helicase DHX40 [EC:3.6.4.13]
Organism
kmr  Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:kmr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:kmr03019]
    108238173 (dhx40)
Messenger RNA biogenesis [BR:kmr03019]
 Eukaryotic type
  mRNA processing factors
   Other processing factors
    108238173 (dhx40)
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C HA2_N DEAD AAA_19 AAA_22 DUF4685 T2SSE Flavi_DEAD AAA_16 nSTAND3 AAA_29
Other DBs
NCBI-GeneID: 108238173
NCBI-ProteinID: XP_017275570
UniProt: A0A3Q2ZLP7
Position
LG2:21909928..21917685
AA seq 740 aa
MFKKTSWKPNDSESKHLPIYRHKTKLVQAVEDSTFLLVTGETGSGKTTQLPQYLHEAGFC
KNGKVGITQPRRVAAITVAQRVAQEMKCTLGREVGYQVRFDDCTSQDTAVKYMTDGCLLR
EVLADPALSQYSVVILDEVHERSLNTDILLGLLKNIFSNPSKATRGRAFPLKVVVMSATM
ETDKLSAFLSSCPVFAIPGRVFPVTCTFGSAVGPKDAESTFYVKEVVKVALDVHTGEKAG
DILVFLTGQSEIERACDLMFEKAECIDYRYDVRDRTVEGLLILPLYGSMPTDQQRQIFQP
PPPGIRKCVVATNIAATSLTINGIKYIVDSGFVKQLSHNSRVGMDVLEVVPISKSEAQQR
AGRAGRTSAGKCFRIYTEEFWEKCMPEYTVPEIQRTSLTAVVLTLKCLSVHDVIRFPYLD
RPEERFILEALKQLYQFDAIDRRGGVTKLGELMVEFPLHPGLTRALLRAASLGCQDLLLP
VAAMLSVENIFIRPGHPDKQKEADKKHRALAAKTGGMNDFATLLSVFQLCKSSDRPSAWC
KDNWIHWRALKSAFSVETQLREILVRLQQRKDFPVETFVGNKSELLRRCLCTGYFTNVAR
RSVGKVFCTMDGHGSMVHIHPASSLFDQEADLNWIVFHDVLVTSRVYVRTVCPIRYEWVK
DLLPKLHEVDVYELSSVAREEVTDEEVTKWETREAAKRQQEVSAEDVRKKLERRNDETTL
SDARARYLQRKQQRQQSKAF
NT seq 2223 nt   +upstreamnt  +downstreamnt
atgttcaagaaaacgagctggaaaccaaacgacagcgagtcgaaacacctccccatctat
cgacacaaaaccaaactagttcaggctgtcgaagacagcactttcctcctggtcaccggg
gaaacgggaagcgggaaaaccacacaacttccacagtacctacatgaagcaggcttttgt
aaaaatggtaaagttgggatcacccagcccaggcgggtggctgccatcacggtggcccag
agggtggctcaggagatgaagtgcaccctgggaagggaggtggggtaccaagtacgcttt
gacgactgcacatcacaggacacggcggtgaagtacatgacagacggctgtttgctccgg
gaggttctggcagaccctgcgctttctcagtacagcgttgtaatactggatgaagttcac
gagcgcagcctcaatacggacattcttcttggcttgttgaagaacatcttctccaacccc
tccaaggccactagggggcgagctttccccctcaaagtggtggtgatgtctgccaccatg
gaaactgacaaactctcagcttttctcagcagctgtcccgtcttcgccatccctgggagg
gtgttcccggtcacgtgcacgtttggctcggctgtcggaccgaaggacgcggagagcacg
ttctacgtcaaggaggtggttaaagtggctctggatgtgcataccggtgaaaaggctgga
gatattctggtatttttgacaggccagtcagagattgagcgtgcctgcgacttgatgttt
gaaaaagctgagtgcatcgactatcgctatgatgtgcgagaccgaacagtggagggcctc
cttattttacccctttatggatccatgcccactgatcaacagagacagatctttcagccc
ccacctccagggataagaaagtgtgtcgtagccacaaacatagcagcaacgtctttaacc
atcaacggcatcaagtacatcgtggacagcggcttcgtgaagcagctcagccacaactcg
agggtgggcatggacgtgctggaggtggtgccgatttcaaagagcgaggcccagcagaga
gcgggccgagctggaagaacctctgccgggaagtgcttccgaatttacaccgaggaattc
tgggagaagtgcatgcctgagtacacggttcccgagattcagaggacgagtctgacggcg
gtggttctcacgctcaagtgtctcagcgttcacgatgtgatcaggtttccttatctggac
cgcccggaggagaggtttattctggaagcactgaaacagctctaccagttcgatgccatt
gacaggaggggtggagtgactaagctcggggagctgatggtggagttcccgctgcacccg
ggtctcaccagggctttgctcagagctgcttcactcggctgccaggacctgctgcttcct
gtggcggccatgctgtccgtggagaacatcttcatcaggccaggtcaccctgacaaacag
aaagaggcagataagaagcacagagccctggccgcaaagacgggcggtatgaacgacttc
gccacactgctcagcgtgtttcagttgtgcaaatccagtgacagaccgtcagcttggtgt
aaggacaactggatccactggagggcgctgaagtcagccttcagcgtggagacgcagctg
agagaaatccttgttcgcctccagcagaggaaagatttccccgttgaaacgtttgtcgga
aacaaaagcgagctcctcagacgatgcctgtgcacaggatatttcacaaacgttgccagg
agatctgttggtaaagtgttttgcacaatggatggccacggatcgatggttcacattcat
ccagcatcatctctgtttgaccaggaggcggatctgaactggatcgtcttccacgatgtg
ctggtcacctcgcgggtctacgtcaggacggtgtgtccgataagatacgagtgggtgaag
gatttgctgcctaaactccacgaagtggacgtctacgagctgagcagcgtcgccagagaa
gaagttactgatgaggaggtgacgaaatgggagaccagagaagctgctaaaagacaacaa
gaggtttctgctgaagacgtgaggaagaagctggagaggcgaaacgatgaaaccacactg
agcgacgctcgagctcgctacctgcagcgaaagcaacagagacagcaaagcaaagcattc
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (13)   
   Pfam (13)   
All databases (24)   

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