KEGG   Kryptolebias marmoratus (mangrove rivulus): 108247881
Entry
108247881         CDS       T05608                                 
Symbol
ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
kmr  Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03022  Basal transcription factors
kmr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:kmr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    108247881 (ercc2)
  09124 Replication and repair
   03420 Nucleotide excision repair
    108247881 (ercc2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:kmr03021]
    108247881 (ercc2)
   03400 DNA repair and recombination proteins [BR:kmr03400]
    108247881 (ercc2)
Enzymes [BR:kmr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     108247881 (ercc2)
Transcription machinery [BR:kmr03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     108247881 (ercc2)
DNA repair and recombination proteins [BR:kmr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     108247881 (ercc2)
SSDB
Motif
Pfam: HBB DEAD_2 Helicase_C_2 ResIII DEAD SesA
Other DBs
NCBI-GeneID: 108247881
NCBI-ProteinID: XP_017291756
UniProt: A0A3Q3BQM4
Position
LG2:complement(2227899..2234863)
AA seq 760 aa
MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
RAFPLDVTKLIYCSRTVPEIEKVVEELRKLMEFYAKETGEVNNFLALALSSRKNLCIHPE
VSSLRFGKEVDGKCHSLTASYIRAQRHSNPNLPACRFYEEFDSVGRQVPLPAGIYNLDDL
KEFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID
NVCIDSMSVNITRRTLDRCQNNVDTLQNTIHKIKETDAAKLREEYRRLVEGLKEANVARE
TDVYLSNPVLPDEILQEAVPGTIRTAEHFVGFLRRFLEYLKSRLRVQHVVQESALQFLKD
IFDKVCIDRKPLRFCAERLQSLLRTLEIADIADFSAVTLISNFATLVSTYSQGFTIIIEP
FEDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVVITSGTLSPLDIYPRILDFRPVTMAS
FTMTLARTCLCPLIVGRGNDQVALSSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT
SYIYMENIVASWYEQGILENIQRNKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHISDGSLNLTVDEAVQLSKHF
LRQMAQPFRQEDQLGLSLLTLQQLESEEMLQKIAQIAHQT
NT seq 2283 nt   +upstreamnt  +downstreamnt
atgaagttgaacatcgagggcctgctggtgtattttccctatgattacatctatccggag
caatactcctacatgctggagctgaagaggaccttagatgccaagggtcacggagtcctg
gaaatgccgtcaggaaccgggaagaccatctctctgctgtctctcatcgtggcgtaccag
agggccttccctttggacgtgaccaagttgatttactgctccagaacagttcctgagatt
gagaaggttgtggaggagctgaggaagctgatggagttttacgccaaagaaaccggagag
gtgaacaacttcctggctctggctctttcctccaggaagaacctctgcatccaccctgag
gtgagctctctgcgctttgggaaggaggtggacgggaagtgccacagcctgacagcatcg
tacatccgagcgcagcgtcacagtaaccccaacctgccggcctgccgcttctacgaggag
ttcgattcggtcgggcgtcaggtgcctcttcctgccggcatctacaacctggacgacctg
aaggagtttggcaggaggaaaggctggtgtccgtattatctggctcgttactcgatcctt
cacgccaacatcgtggtgtacagctaccactacctgctggacccaaagatcgctgacctg
gtgtccaaagaactcgccaagaaatccgtggtggtgtttgacgaggctcataatatcgat
aatgtttgcatcgactccatgagtgtgaacataacgagacgaacgctggaccgctgccag
aacaacgtggacacgctccagaacaccatccacaagatcaaggagacggatgctgctaaa
ctgagggaggagtaccggcggctggtggaggggctgaaggaggccaacgtcgcccgggag
acggacgtctacctgtcaaatccagtgttacctgacgagattctgcaagaggcggttccc
ggtacgatccggacggccgagcacttcgtgggtttcctgagacgtttcctggagtacctg
aagtcccgcctgcgggtccagcacgtggtgcaggagagcgcgctgcagtttctcaaagac
atcttcgacaaagtctgcatcgaccgcaaacctctcaggttttgcgcagagaggctgcag
tctctgctgaggactctggagatcgccgacatcgcggacttctccgccgtcacgctcatc
tccaactttgcgactctcgtcagcacctacagccaaggtttcaccatcatcatcgagccg
tttgaagacagaactccgaccatcgccaaccccgtgctgcacttcagctgcatggacccc
tccatcgccatcaaacctgtttttcagaggttccagtcggtcgtcatcacctcagggacc
ctgtctccgttggacatctatcccagaatcctggacttccgtcccgttaccatggcgtcc
ttcaccatgacgctggcccggacctgcctctgtcctctgatcgtcggcagaggcaacgat
caggtggctctgagctccaagtttgaaaccagagaggattttgctgtgatccgtaactat
ggcaacctgctcctggagatgtctgcgattgttcctgatgggatcgttgcattcttcacc
agctacatctacatggagaacatcgtggcgtcctggtacgaacagggaatcctggagaac
attcagagaaacaagctgatcttcatcgagacgcaggacgctgcagagaccagcatggct
ctggagaagtaccaggaggcctgtgagaacggcagaggagccatcctgctctccgtggcc
cgagggaaagtgtctgaaggaatagatttcgtgcatcattttggccgagcggtcatcatg
ttcggagtcccgtatgtttacacccagagccgcatcctgaaggctcgtctggagtacctg
cgggatcagtttcagatcagggagaacgacttcctgacgttcgacgccatgcggcacgcc
gctcagtgcgtgggccgcgccatcagagggaaaaccgactacggcctgatgatttttgcg
gacaagcgatacgcccgcgcagacaaacgggggaagcttcctcgctggattcaggagcac
atcagcgacggcagcctgaacctcaccgtggatgaggcggtccagctgtccaaacacttc
ctgcgtcagatggctcagcccttcagacaggaggaccagctgggtctgtctctgctgact
ctccagcagctggagtcggaggagatgctgcagaaaatcgctcagatcgctcatcagacc
taa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (21)   

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