KEGG   ORTHOLOGY: K12624Help
Entry
K12624                      KO                                     

Name
LSM5
Definition
U6 snRNA-associated Sm-like protein LSm5
Pathway
ko03018  RNA degradation
ko03040  Spliceosome
Module
M00354  Spliceosome, U4/U6.U5 tri-snRNP
M00396  Lsm 2-8 complex
M00397  Lsm 1-7 complex
Brite
KEGG Orthology (KO) [BR:ko00001]
 Genetic Information Processing
  Transcription
   03040 Spliceosome
    K12624  LSM5; U6 snRNA-associated Sm-like protein LSm5
  Folding, sorting and degradation
   03018 RNA degradation
    K12624  LSM5; U6 snRNA-associated Sm-like protein LSm5
KEGG modules [BR:ko00002]
 Structural complex
  Genetic information processing
   Spliceosome
    M00354  Spliceosome, U4/U6.U5 tri-snRNP
     K12624  LSM5; U6 snRNA-associated Sm-like protein LSm5
    M00396  Lsm 2-8 complex
     K12624  LSM5; U6 snRNA-associated Sm-like protein LSm5
    M00397  Lsm 1-7 complex
     K12624  LSM5; U6 snRNA-associated Sm-like protein LSm5
Messenger RNA biogenesis [BR:ko03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     K12624  LSM5; U6 snRNA-associated Sm-like protein LSm5
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     K12624  LSM5; U6 snRNA-associated Sm-like protein LSm5
Spliceosome [BR:ko03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    K12624  LSM5; U6 snRNA-associated Sm-like protein LSm5
BRITE hierarchy
Other DBs
COG: COG1958
Genes
HSA: 23658(LSM5)
PTR: 463335(LSM5)
PPS: 100991625(LSM5)
GGO: 101150838(LSM5)
PON: 100173625(LSM5)
NLE: 100579279(LSM5)
MCC: 693550(LSM5) 702299
MCF: 102123507(LSM5)
CSAB: 103226255(LSM5)
RRO: 104654253(LSM5) 104660005 104679365 104682016
CJC: 100409872(LSM5)
SBQ: 101030216(LSM5)
MMU: 66373(Lsm5)
RNO: 306222(Lsm5)
CGE: 100764270(Lsm5)
NGI: 103729460(Lsm5)
HGL: 101720314(Lsm5)
CCAN: 109696789(Lsm5)
OCU: 100347824(LSM5)
CFA: 611686(LSM5)
AML: 100472616(LSM5)
UMR: 103658954(LSM5)
ORO: 101376196(LSM5)
FCA: 101090251(LSM5)
PTG: 102968107(LSM5)
AJU: 106968662(LSM5)
BTA: 615136(LSM5)
BOM: 102264920(LSM5)
BIU: 109557468(LSM5)
PHD: 102325785(LSM5)
CHX: 102171027(LSM5)
OAS: 101121254(LSM5)
SSC: 100624767(LSM5)
CFR: 102522321(LSM5)
CDK: 105095857(LSM5)
BACU: 103015098(LSM5)
LVE: 103088504(LSM5)
OOR: 101274590(LSM5)
ECB: 100055259(LSM5)
EPZ: 103565922(LSM5)
EAI: 106831074(LSM5)
MYB: 102258795(LSM5)
MYD: 102767260(LSM5)
HAI: 109374305(LSM5)
RSS: 109461235(LSM5)
PALE: 102890317(LSM5)
LAV: 100672599(LSM5)
TMU: 101346333
MDO: 100018797(LSM5)
SHR: 100917493(LSM5)
GGA: 420751(LSM5)
MGP: 100550547(LSM5)
CJO: 107309883(LSM5)
APLA: 101801966(LSM5)
ACYG: 106045498(LSM5)
TGU: 100190552(LSM5)
GFR: 102037580(LSM5)
FAB: 101809226(LSM5)
PHI: 102111655(LSM5)
PMAJ: 107198935(LSM5)
CCW: 104690444(LSM5)
FCH: 102052753 102055399(LSM5)
CLV: 102090834(LSM5)
EGZ: 104123081(LSM5)
AAM: 106489058(LSM5)
ASN: 102376189(LSM5)
AMJ: 102565642(LSM5)
PSS: 102448007(LSM5)
CPIC: 101946853 101950419(LSM5)
ACS: 100555115(lsm5)
PVT: 110088765(LSM5)
PBI: 103067697(LSM5)
GJA: 107105738(LSM5)
XLA: 447076(lsm5.L)
XTR: 100216118(lsm5)
NPR: 108797465(LSM5)
DRE: 563948(lsm5)
SGH: 107551846(lsm5)
IPU: 108273878(lsm5)
AMEX: 103037564(lsm5)
TRU: 101062322(lsm5)
LCO: 104937801(lsm5)
NCC: 104949963(lsm5)
MZE: 101472731(lsm5)
OLA: 101173342(lsm5)
XMA: 102229891(lsm5)
PRET: 103456711(lsm5)
NFU: 107383098(lsm5)
CSEM: 103377155(lsm5)
LCF: 108885071(lsm5)
HCQ: 109518803(lsm5)
BPEC: 110162699(lsm5)
SASA: 100286720(lsm5) 106590312
ELS: 105030051(lsm5)
SFM: 108927684(lsm5)
LCM: 102347003(LSM5)
CMK: 103183400(lsm5)
CIN: 100180713
APLC: 110981087
SKO: 100371711
DSI: Dsimw501_GD13931(Dsim_GD13931)
MDE: 101898550
AAG: 5563838
AME: 725641
BIM: 100744393
BTER: 100651159
SOC: 105198541
AEC: 105144724
ACEP: 105621418
PBAR: 105426555
HST: 105188504
CFO: 105252644
LHU: 105673507
PGC: 109853012
NVI: 107981936
TCA: 657007
DPA: 109537702
NVL: 108560316
BMOR: 101738634
PMAC: 106713233
PRAP: 110992161
API: 100167114
DNX: 107166981
ZNE: 110832152
FCD: 110858502
CEL: CELE_F28F8.3(lsm-5)
CBR: CBG18602(Cbr-lsm-5)
CRG: 105321817
MYI: 110458745
OBI: 106871729
LAK: 106160346
SHX: MS3_07082
EPA: 110244101
ADF: 107349417
HMG: 100204880
AQU: 100636859
ATH: AT5G48870(SAD1)
CRB: 17874901
CPAP: 110823173
CIT: 102627562
TCC: 18612818
VRA: 106752845
VAR: 108319385
CCAJ: 109813241
CAM: 101496347
ADU: 107481701
AIP: 107631561
LJA: Lj4g3v0281060.1(Lj4g3v0281060.1)
FVE: 101297956
PPER: 18767352
PMUM: 103334338
PAVI: 110770676
CSV: 101208670
CMO: 103494906
MCHA: 111025553
RCU: 107261415
VVI: 100264807
SLY: 101256523
SPEN: 107029605
SOT: 102579366
NSY: 104232818
NTO: 104111726
SIND: 105163505
OEU: 111393364
LSV: 111907677
SOE: 110806136
NNU: 104598217
OSA: 4338670
DOSA: Os05t0389300-01(Os05g0389300)
OBR: 102714457
BDI: 100837074
ATS: 109782122(LOC109782122)
SBI: 8076844
SITA: 101755385
PDA: 103698525
EGU: 105049144
MUS: 103994183
DCT: 110103273
ATR: 18435472
PPP: 112279631
CRE: CHLREDRAFT_58042(LSM5)
MNG: MNEG_1305
APRO: F751_3405
SCE: YER146W(LSM5)
ERC: Ecym_5554
KMX: KLMA_20025(LSM5)
NCS: NCAS_0A03890(NCAS0A03890)
NDI: NDAI_0E03360(NDAI0E03360)
TPF: TPHA_0D04330(TPHA0D04330)
TBL: TBLA_0A08590(TBLA0A08590)
TDL: TDEL_0B04180(TDEL0B04180)
KAF: KAFR_0B02310(KAFR0B02310)
CAL: CAALFM_C114410WA(CaO19.7256)
CAUR: QG37_06743
NCR: NCU03766
NTE: NEUTE1DRAFT116005(NEUTE1DRAFT_116005)
MGR: MGG_02462
MAW: MAC_05931
CMT: CCM_03152
BFU: BCIN_05g00710(Bclsm5)
MBE: MBM_07791
ANI: AN5679.2
ANG: ANI_1_116114(An13g00820)
PTE: PTT_17081
SPO: SPBC20F10.09(lsm5)
CNE: CNA00090
CNB: CNBA0080
MRR: Moror_922
ABP: AGABI1DRAFT110162(AGABI1DRAFT_110162)
ABV: AGABI2DRAFT189942(AGABI2DRAFT_189942)
MGL: MGL_3301
DDI: DDB_G0268716(lsm5)
DFA: DFA_11296(lsm5)
PYO: PY17X_1311000(PY01913)
PCB: PCHAS_131040(PC000554.03.0)
TAN: TA05750
TPV: TP01_0806
BBO: BBOV_IV009630(23.m05873)
CPV: cgd7_4580
SMIN: v1.2.015903.t1(symbB.v1.2.015903.t1)
SPAR: SPRG_04072
 » show all
TaxonomyKoalaUniProt
Reference
  Authors
Kufel J, Bousquet-Antonelli C, Beggs JD, Tollervey D
  Title
Nuclear pre-mRNA decapping and 5' degradation in yeast require the Lsm2-8p complex.
  Journal
Mol Cell Biol 24:9646-57 (2004)
DOI:10.1128/MCB.24.21.9646-9657.2004
  Sequence
[sce:YER146W]

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