KEGG   Klebsiella michiganensis E718: A225_0242
Entry
A225_0242         CDS       T02173                                 
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
koe  Klebsiella michiganensis E718
Pathway
koe03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:koe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    A225_0242
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:koe03021]
    A225_0242
   03400 DNA repair and recombination proteins [BR:koe03400]
    A225_0242
Enzymes [BR:koe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     A225_0242
Transcription machinery [BR:koe03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     A225_0242
DNA repair and recombination proteins [BR:koe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      A225_0242
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AFN30167
Position
250460..254683
AA seq 1407 aa
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDANGEFVAKTSLKDTTIGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKYEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRNGEEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEHWCDLLEENSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIRL
SNAKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMAKGDGEQVAGGETVANW
DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIESAGSSDFLEGEQVEYSRVKIANRDLEANGKVGATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA
APQVSVEEASANLAELLNAGLGGSDND
NT seq 4224 nt   +upstreamnt  +downstreamnt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgatccgttcatggtcttttggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaacctgagcgtgacggccttttctgtgcgcgt
attttcgggccagtaaaagactacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgcggtgtgatctgtgagaagtgcggcgttgaagtgacccagactaaagtgcgccgtgag
cgtatgggccacatcgagctggcgtctccgaccgcccacatctggttcctgaagtctctg
ccgtcccgtatcggcctgctgctcgatatgccgctgcgcgatatcgaacgcgtgctgtac
ttcgaatcctatgtggttatcgaaggcggtatgaccaacctggaacgccagcagatcctg
actgaagaacagtatctggacgcgctggaagagttcggtgacgaatttgacgcgaagatg
ggtgcggaagctatccaggccctgctgaagagcatggatctggagcaagagtgtgaaact
ctgcgcgaagagctgaacgaaaccaactccgaaaccaagcgtaagaagctgaccaagcgt
atcaaactgctggaagcgttcgtacagtctggcaacaagccggagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggttccgctggatggcggtcgtttc
gcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccggacatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggtcgacgccctgctggataacggtcgtcgcggtcgtgcgatcaccggttctaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaagcagggtcgttttcgtcag
aacctgctcggtaagcgcgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgctggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggcctcgccaccaccatcaaagccgctaagaaaatg
gttgagcgtgaagaagctgtcgtttgggatatcctggacgaagtgatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtctgggtatccaggcatttgagccggta
ctgatcgaaggtaaagctattcagctgcacccgctggtttgtgcggcatacaacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctccggcgaacggcgaaccaatcatc
gttccgtctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatttatcgcgctggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcactgaatacgaaaaagatgctaac
ggcgaattcgttgcgaaaaccagcctgaaagacacgactatcggccgtgccattctgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgctgggtaagaaagcg
atctccaaaatgctgaacacctgctaccgtattctgggcctgaaaccgaccgttattttt
gcggaccagacgatgtacaccggctttgcttatgcagcgcgctcaggtgcatccgttggt
atcgatgacatggtcatcccggagaaaaaatacgagatcatcagcgaagcggaagcggaa
gttgctgagattcaggagcagttccagtcgggtctggttaccgctggcgaacgctacaac
aaagttatcgatatctgggccgcggcgaacgatcgtgtatccaaagcgatgatggacaac
ctgcaaactgaaaccgttattaaccgtaacggcgaagaagagcagcaggtctccttcaac
agcatttacatgatggccgactccggtgcgcgtggttctgctgcacagattcgtcagctt
gccggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaacggcgaactccggttacctgactcgtcgtctg
gttgacgttgcgcaggacctggtcgtgactgaagacgactgtggcaccctggaaggcatc
accatgaccccggttatcgagggtggcgatgttaaagagccgctgcgcgatcgcgtactg
ggtcgtgtgaccgctgaagacgttctgaagccgggtacggcggacattctggttccacgc
aacacgctgctgcacgagcactggtgcgatctgctggaagagaactccgttgactccgtc
aaagtgcgttccgttgtatcctgtgacaccgactttggtgtatgtgcgcactgctacggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaggctatcggcgttatcgcggca
cagtccatcggtgaaccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgagtccagcatccaggtgaaaaacaaaggtagcatccgtctg
agcaacgcgaagtcggttgtgaactccagcggtaagctggttattacttcccgtaatacc
gagctgaagctgatcgacgaattcggtcgtaccaaagagagctataaagtgccttacggc
tccgttatggcgaaaggtgatggcgagcaggttgccggcggtgaaaccgtagcaaactgg
gatccgcacaccatgccggttatcaccgaagtgagtggttttgtccgcttcactgacatg
attgacggccagaccattactcgtcagaccgacgagctgaccggtctgtcttctctggtg
gttctggattctgcagagcgtaccactggcggtaaagatctgcgtccggcgctgaaaatc
gttgatgctcagggcaatgacgttctgatccctggcaccgatatgcctgcgcagtacttc
ctgccgggtaaagcgattgttcagctggaagatggcgtccagatcagctctggtgacacc
ctggcgcgtgtaccgcaggaatccggcggtaccaaggacatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcgcgtcgtccgaaagagccggcaatcctggctgaaatcagc
ggcatcatttccttcggtaaagaaaccaaagggaaacgtcgtctggttatcaccccggta
gacggtagcgatccgtacgaagagatgattcctaagtggcgtcagctcaacgtgttcgaa
ggtgaacgcgtagaacgtggtgacgtggtttccgacggtccggaagcgccgcacgacatt
ctgcgtctgcgtggcgtgcatgctgtgactcgttacattgttaacgaagttcaggacgta
taccgtctgcagggcgttaagattaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaagcgaccatcgaaagcgccggtagctccgacttcctggaaggcgaacaggtt
gaatactctcgcgttaagattgctaaccgcgatctggaagcgaacggcaaagtgggtgca
acattctcccgcgatctgctgggtatcaccaaagcgtccctggcaaccgaatcgttcatc
tctgccgcatcgttccaggagaccacccgtgtcctgaccgaagcagccgttgcgggtaaa
cgcgacgaactgcgtggcctgaaagagaacgttatcgtgggtcgtctgatcccggccggt
accggttatgcgtaccaccaggatcgtatgcgccgtcgcgcagcgggcgaactgcctgca
gcgccgcaggtcagcgtggaagaagcttctgctaacctggcagaactgctgaacgcgggt
ctgggcggttctgacaacgattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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