KEGG   Kosakonia sp. CCTCC M2018092: EH164_06255
Entry
EH164_06255       CDS       T05734                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
kot  Kosakonia sp. CCTCC M2018092
Pathway
kot03030  DNA replication
kot03410  Base excision repair
kot03420  Nucleotide excision repair
kot03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:kot00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    EH164_06255 (ligA)
   03410 Base excision repair
    EH164_06255 (ligA)
   03420 Nucleotide excision repair
    EH164_06255 (ligA)
   03430 Mismatch repair
    EH164_06255 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:kot03032]
    EH164_06255 (ligA)
   03400 DNA repair and recombination proteins [BR:kot03400]
    EH164_06255 (ligA)
Enzymes [BR:kot01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     EH164_06255 (ligA)
DNA replication proteins [BR:kot03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     EH164_06255 (ligA)
DNA repair and recombination proteins [BR:kot03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     EH164_06255 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     EH164_06255 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     EH164_06255 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      EH164_06255 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD HHH PTCB-BRCT 5_3_exonuc zf-NADH-PPase
Other DBs
NCBI-ProteinID: AZI86691
Position
1331367..1333385
AA seq 672 aa
MESIEQQLTELRTTLRHHEHLYHVMDAPEIPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAAPLTAFTQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDALIYCCELKLDGLA
VSLLYENGVLMRAATRGDGTTGEDITSNVRTIRAIPLKLRGENIPARLEVRGEVFLPQSG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGILEGGELPNSHL
ARLQQFKAWGLPVSDRIRLCGTPEEVLAFYHKVEEDRPTLGFDIDGVVIKVDSLDLQAQL
GFVARAPRWAVAFKFPAQEQLTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIDRLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREVTFPAHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALMA
ASVDELQKVPDVGVVVAKHVHNFFSEESNRDVIRQLTEEVGIHWPAPLVVNAEEIDSPFA
GKTVVLTGSLSQLSRDEAKERLTALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAV
IDEDEMIRLLGA
NT seq 2019 nt   +upstreamnt  +downstreamnt
atggaatcaattgaacaacaactgacagaactgcgaactacccttcgccatcatgaacat
ctctatcacgttatggacgcgccggagatcccggatgccgagtacgatcgcctgatgcgt
gagctgcgcgagctggaagcgcaacatcctgagctgattacgccggattcaccgacccag
cgcgtcggcgccgcaccgctcaccgcctttacgcagatacgtcatgaagtgccgatgctg
tcgctcgataacgtcttcgatgaagagagctttctggcgttcaataaacgcgtacaagac
cgcttaaagagcagcgacgcactgatctactgctgcgagctgaagctcgacggtctggcg
gtcagcctgctgtatgaaaacggcgtgctgatgcgcgccgccacgcgcggcgatggcact
accggggaagatatcacctctaacgtgcgcaccatccgcgccattccgctgaagctgcgc
ggggagaacattccggcgcgcctggaagtgcgcggtgaagttttcctgccgcaatccggc
tttgagaagatcaatgaagaggctcgtcgcaccggcgggaaagtgtttgctaacccgcgt
aacgccgccgccggttcgctacgccagctcgacccgcgtatcaccgcgaagcgtccgctc
accttcttctgctacggcattggcatcctcgaaggcggcgagctgcccaacagccacctg
gcgcgtttacagcagtttaaagcgtggggcttgccggtgagcgatcgcatccgcctgtgc
ggcacgccggaagaggtgctggccttctatcataaagttgaggaagaccgcccgacgctg
gggtttgatatcgacggcgtggtaatcaaggtcgactccctcgatctgcaagcgcagctc
ggctttgtggcgcgtgcgccgcgctgggcggtggcgtttaaattcccggcgcaggagcag
ctgacgtttgtgcgcgatgtcgagttccaggtaggccgtaccggggcgataacccctgtc
gcacgccttgagccggtacacgttgccggggtgctggtcagtaacgccaccctgcataat
gccgatgagattgaccgtcttggcctgcgtatcggtgacaaagtggtgattcgccgcgcc
ggggatgtgatcccgcaggtggtgaatgtagtgctctccgaacgcccggaagagacgcgg
gaagtgaccttcccggcacactgcccggtgtgcggctccgatgtcgagcgtgtggaaggc
gaagcggttgcccgctgtaccggcggcctcatctgcggcgcgcagcgcaaagagtcgctt
aagcatttcgtctcgcgccgcgcgatggatgtggatggcatgggcgataagattatcgac
cagctggttgagaaggagtacgtccacacgcctgcggatctcttccgtctgactgccggt
aagctgaccggtctcgatcggatggggccgaagtcggctcaaaacgtggtcaacgcgctg
gaaaaagcgaaagagactacctttgcccgtttcctctatgcgctcggcattcgcgaagtg
ggcgaagcgacggcggcagggctggcggcctacttcggcacgctggaggcattaatggca
gcctcggttgacgagctgcaaaaagtgccggacgtcggcgtggtggtggcaaaacacgtg
cataacttcttcagcgaagagagcaaccgcgacgtgattcgccagctgacggaagaagtg
ggcattcactggcccgcgccgctggtggttaacgccgaggagatcgacagcccgtttgcc
ggtaaaaccgtggtgttaaccggtagcctgagccagctttcgcgcgacgaggccaaagag
cgcttaacggcgctgggggcgaaagtggccggcagcgtatcgaagaagaccgatctggtg
attgccggtgaagccgcaggctcgaagctggcgaaagcgcaggagctaggcattgcggtc
attgatgaagatgaaatgattcgtctgctgggagcctga

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