KEGG T03949: IX53

Kosmotoga pacifica: IX53_08385

Entry

IX53_08385        CDS       T03949

Name

(GenBank) hypothetical protein

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

kpf Kosmotoga pacifica

Brite

KEGG Orthology (KO) [BR:kpf00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:kpf03016]
    IX53_08385
Enzymes [BR:kpf01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     IX53_08385
Transfer RNA biogenesis [BR:kpf03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    IX53_08385
Prokaryotic type
   tRNA splicing ligases
    IX53_08385

SSDB

Motif

Pfam:

RtcB

Other DBs

NCBI-ProteinID:

AKI97825

UniProt:

A0A0G2Z883

Position

1799075..1800229

AA seq 384 aa
MIKFSPKLKAKLWVPIDKIEKEALEQIRNLSTIPDLFKWIAVMPDVHPGYGMPIGGVAAL
KGCVIPNAVGMDIGCGVVCIKTNLTTDEIHSYLTEILRQILQEIPVGFKWRKKAVQTDFW
EKYEIEDPVISSEKNNAKKQLGTLGGGNHFIEIQKDEEGTVYLTLHSGSRNLGKQVATYY
NKKAQEFCKKQGVQPPSGLAWLPLDSKIGRQYLRAMNFCLDFASENRRILTESALGVLRR
FFPKLEVLERIETVHNYASLEEHYGETVLVHRKGAVRAEGKVVIPGSMGSPTYIAEGLRN
PESFMSCSHGAGRTLGRHEAKRKLSYAEVKKDLDERNVILMTPDKSAIIEEARVAYKDID
MVMDYQQDLVRRSIKLLPMGVIKG

NT seq 1155 nt +upstreamnt +downstreamnt
atgattaaattcagtcctaaattgaaagcaaagctctgggtgccaatagataaaattgaa
aaggaagctctggaacaaatcagaaatctttccacgattccggatcttttcaaatggata
gcggtgatgccagatgtacacccgggttatggtatgcccataggtggcgtcgcggcattg
aagggctgtgttatccccaacgccgtgggcatggatatcggttgcggcgtggtctgcata
aaaaccaatcttacgaccgacgaaattcacagctacctgaccgaaatcctaagacagata
ttgcaagaaataccagtaggattcaaatggaggaagaaagctgtacagacggacttctgg
gaaaagtacgaaatagaagatcccgtcatatccagtgagaagaacaacgctaaaaagcag
cttggcactctgggtggtgggaaccattttatcgagatacaaaaggacgaagaagggacg
gtatatctaacgcttcatagcggttcgcgcaatctcggcaaacaggtagcaacatattac
aataaaaaagctcaagagttctgcaaaaaacaaggagtccagcccccgtcaggactggca
tggcttccccttgatagtaaaatcggtaggcaatatctgagagccatgaatttctgtctt
gatttcgcctctgaaaacaggcgaattctcacagaatctgccctaggcgtgctaagacgc
ttctttccgaagcttgaggtactggaacgcattgagacggtgcacaattatgcgagcctt
gaagagcattacggagaaactgtgcttgtccatcgaaagggtgcggtgcgggcagaaggc
aaggttgttattccaggttctatgggcagtcccacctatattgcggaaggtttgagaaac
cccgagagtttcatgtcgtgttctcatggtgctggtcgaacactcggtagacacgaagca
aaaaggaagctcagttacgccgaagtgaagaaagatcttgatgaaagaaatgttattctt
atgacaccagataaaagcgccattatagaagaggcaagagtggcttacaaagatatcgac
atggttatggactatcagcaggatcttgtgagacgctccatcaagctcttacctatgggt
gttatcaagggttaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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