KEGG   Kosakonia radicincitans: A3780_22155
Entry
A3780_22155       CDS       T04579                                 
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
krd  Kosakonia radicincitans
Pathway
krd02020  Two-component system
krd02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:krd00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    A3780_22155
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    A3780_22155
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:krd03021]
    A3780_22155
Transcription machinery [BR:krd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     A3780_22155
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID
Other DBs
NCBI-ProteinID: APG20133
Position
4784846..4786279
AA seq 477 aa
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQADLHEEVDSQQ
TQENEGLDTVDALEQKEMPEELPLDASWDEIYTAGTPSGSSHDYIDDELPIYQGETTQSL
QDYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVSLEDVLESMGDEEIGLDEVEAVLK
RVQRFDPVGVAARDLRDCLLIQLSQFAKDTPWCEEARLIISDHLDLLANHDFRSLMRVTR
LKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGRWTVELNSDSIPRLQIN
QHYASMGGGARNDADTQFIRSNLQEAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEE
FMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAI
RALVKKLIAAENPAKPLSDSKLTTLLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV
NT seq 1434 nt   +upstreamnt  +downstreamnt
atgaagcaaggtttgcaattaaggcttagccaacagctagctatgacgccgcaactgcaa
caggctatccgtctgttgcagctgtctacgttagaacttcagcaggaacttcagcaagcg
ctggagagtaacccattgctggaacaagccgatcttcatgaagaagtggatagccaacaa
acccaggaaaatgaaggcctggatactgtagacgcgctcgaacagaaagagatgcctgaa
gagctgccgctggacgccagctgggatgagatttataccgccggaacgccttccggcagc
agccacgattatattgatgacgaactgccgatttatcagggtgaaacgacacagtctctt
caggattacctgatgtggcaggtagagttaacgccgttttccgataccgatcgcgcaatc
gcaacctctattgtcgatgctgtcgatgagaccggctaccttaccgtgtcgcttgaggat
gtgctggaaagcatgggcgatgaagaaatcggtctcgatgaagttgaagcggtgttaaag
cgcgttcagcgtttcgatccggttggcgtcgctgcgcgcgatctgcgcgactgcctgttg
atccaactgtcccaattcgcgaaagatacgccctggtgtgaagaggctcgcctgattatc
agcgatcaccttgatctgctcgctaaccatgatttccgctctctcatgcgcgtcacacgt
cttaaagaggatgtgctgaaagaagcggtaaatctgatccagtcgctggatccgcgcccc
ggccagtcgatccagaccggtgaaccagaatatgtcatcccggatgtgctggtgcgtaag
cacaacgggcgctggacggtagaactgaactccgatagcattccgcgtctgcaaatcaac
cagcactacgcttcaatgggcggtggcgcgcgcaatgacgccgacacccagtttatccgc
agtaacttgcaggaagcgaagtggctgatcaaaagccttgaaagccgtaatgacacgcta
ttgcgcgtcagccgctgcatcgtcgagcagcagcaggcattctttgaacagggcgaagag
tttatgaaaccgatggtgctggcggatatcgctcaggccgtcgaaatgcacgagtccacg
atttcccgtgtgacaacgcagaagtacctgcacagtcctcgcggcatttttgaactgaag
tatttcttctccagccatgtgaatacggaaggcggcggcgaagcctcgtcaacagccatt
cgcgcactggttaagaaattaatcgccgcagaaaaccctgcaaaaccactgagcgacagt
aagctgacgacgctactttccgatcaaggaattatggtagcgcggcgtaccgttgcgaag
tatcgagagtctttatccattccgccgtctaaccagcgtaaacagctggtgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (11)   

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