KEGG T00701: KRH

Kocuria rhizophila: KRH_14110

Entry

KRH_14110         CDS       T00701

Symbol

rnd

Name

(GenBank) putative ribonuclease D

K03684

ribonuclease D [EC:3.1.13.5]

Organism

krh Kocuria rhizophila

Brite

KEGG Orthology (KO) [BR:krh00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:krh03016]
    KRH_14110 (rnd)
Enzymes [BR:krh01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     KRH_14110 (rnd)
Transfer RNA biogenesis [BR:krh03016]
Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    KRH_14110 (rnd)

SSDB

Motif

Pfam:

DNA_pol_A_exo1 DNA_pol_A_exoN HRDC

Other DBs

NCBI-ProteinID:

BAG29758

NITE:

KRH_14110

UniProt:

B2GJ53

Position

1587719..1588981

AA seq 420 aa
MVPGFEHLAIPATVHLNGPAEGLPRVVDTARGLSRAAEQLAAAHGPVAVDTERASGFRYG
QRAFLVQLRREGAGTVLIDPEAVGSLAEVDEALRGVEWVLHAATQDMPCLAELDMHPDEL
FDTELGGRLLGLRKVGLASMTEELLGFTLSKEHSAVDWSQRPLPVDWLNYAALDVEVLVQ
LRWATEERLARAGKLDWALEEFEHVRTAPPPAPRQDPWRRTHGLGNVRGRRKLTAVRNLW
LARESLAEHKDLAPTRLLPDSAIIAAANAMPRTVPQLMSTPGFHGRLASREAPRWLAAVQ
EARLTEEPVPATIPSTALPPVKGWETKRPEASARLKVLKPAVAALAEELELPTENLLTPE
HLRRFCWQPPRSTSDDAVAERLRELGARSWQVERVAPVIGAEWRALRARRRADKAGEPQD

NT seq 1263 nt +upstreamnt +downstreamnt
gtggtgcccggtttcgagcacctcgcgatccccgcgaccgtgcacctcaacggcccggcc
gagggactgccccgcgtggtggacaccgcccgggggctcagccgtgccgccgagcagctc
gcggcggcccacgggcccgtggccgtggacaccgagcgcgcctcgggcttccgctacggc
cagcgcgccttcctggtacagctgcggcgcgagggtgccgggaccgtgctgatcgacccg
gaggccgtgggctccctggccgaggtggacgaggccctgcgcggtgtggagtgggtgctg
cacgcggccacgcaggacatgccgtgcctcgcggagctcgacatgcaccccgacgagctg
ttcgacaccgagctgggcggacggctgctggggctgcgcaaggtggggctcgcgtccatg
accgaggagctgctggggttcacgctgtccaaggagcactccgccgtggactggtcccag
cggcccctgccagtggactggctcaactacgccgcgctggacgtggaggtgctcgtgcag
ctgcgctgggccacggaggagcgcctcgcgcgggccggcaagctggactgggcgctcgag
gagttcgagcacgtgcgcaccgcgcccccgcccgcgccccggcaggacccgtggcggcgc
acgcacgggctcggcaacgtgcgcggtcggcgcaagctcaccgcggtgcgcaacctgtgg
ctcgcgcgggagtccctcgccgagcacaaggacctcgcccccacgcgcctgctgccggac
tccgcgatcatcgccgcggccaacgcgatgccacgcaccgtgccccagctcatgtccacc
cccggcttccacggccggctcgcctcccgcgaggctccgcgctggctcgccgccgtgcag
gaggcccgcctcacggaggagcccgtgcccgccacgatcccctccacggcgctgcccccg
gtcaagggctgggagaccaagcgccctgaggcctccgcccggctcaaggtgctgaaaccg
gcggtcgcggccctcgcggaggagctggagctgcccacggagaacctgctcacacccgag
cacctgcgccgcttctgctggcagcccccgcgctccacgtccgacgacgccgtggccgag
cggctgcgcgagctcggggcccgctcgtggcaggtggagcgggtcgcccccgtgatcggt
gccgagtggcgggccctgcgcgcccgccgccgcgcggacaaggccggcgagccccaggac
tga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NITE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (21)   

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