KEGG   Klebsiella variicola At-22: Kvar_1298
Entry
Kvar_1298         CDS       T01170                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
kva  Klebsiella variicola At-22
Pathway
kva03030  DNA replication
kva03410  Base excision repair
kva03420  Nucleotide excision repair
kva03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:kva00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Kvar_1298
   03410 Base excision repair
    Kvar_1298
   03420 Nucleotide excision repair
    Kvar_1298
   03430 Mismatch repair
    Kvar_1298
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:kva03032]
    Kvar_1298
   03400 DNA repair and recombination proteins [BR:kva03400]
    Kvar_1298
Enzymes [BR:kva01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Kvar_1298
DNA replication proteins [BR:kva03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Kvar_1298
DNA repair and recombination proteins [BR:kva03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Kvar_1298
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Kvar_1298
   MMR (mismatch excision repair)
    DNA ligase
     Kvar_1298
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Kvar_1298
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH 5_3_exonuc DZR_2 Prok-E2_C DUF2229 DUF1799
Other DBs
NCBI-ProteinID: ADC57224
Position
1368816..1370831
AA seq 671 aa
MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELITPDSPTQ
RVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDDLTYCCELKLDGLA
VSILYENGVLMQAATRGDGTTGEDITSNVRTIRTIPLKLHGENIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHS
ARLQQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEDRPHLGFDIDGVVIKVDSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVFPTHCPVCQSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLSAG
KLTGLDRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAALAAHFGTLEALEQ
ASIEELQKVPDVGIVVATHTFNFFAEESNRDVIAQLLAEGVHWPAPVVVKAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMMRLLGE
NT seq 2016 nt   +upstreamnt  +downstreamnt
atggaaccgatcgaacaacaactgactgaactgcgaaccacgcttcgccatcatgaatat
ctgtaccacgttatggacgcgccggaagtgcccgatgcggaatatgaccgcctgatgcgc
gagctgcgcgagctggagagtcaacatccggagctgattaccccggactcgccgactcag
cgggtgggggcggcgccactaactgccttcagccagatccgccatgaagtgccgatgctg
tcgctggacaacgtgtttgatgaagagagctttctcgccttcaacaagcgggtacaggat
cgcctgaaaagcactgacgatctcacctactgctgcgagcttaagctcgacggcctcgcg
gtgagtattctctacgaaaacggcgtactgatgcaggccgcgacccgcggcgacggtacc
accggcgaggatattacctccaatgtgcgaaccattcgcactatccccctcaagctgcat
ggcgagaatatcccggcacgtcttgaggtgcgtggtgaggttttccttccgcaggccggg
tttgaaaaaatcaatgaagaagcgcgccgcaccggcggaaaagtgtttgctaacccgcgt
aatgcggcggcgggttcgctgcgccagctcgatccgcgcatcacggcgaagcgaccgctt
actttcttctgctacggcgttggcgtgctggagggcggtgagctgccggccagccactcg
gcccgtttgcagcagttcaaagcatggggactgccggtgagcgatcgcgtcaccctgtgt
catactcccgaggaagtgctcacttactatcgtaaagtcgaggaagatcgtcctcatctg
ggctttgacattgatggcgtggtgatcaaagtcgattcgctggcgctgcaggagcagttg
ggttttgtggcccgcgcgccgcgctgggccgtggcctttaagttcccggcacaggagcag
atgactttcgtccgggatgtggagttccaggtagggcgcaccggggcgatcacgccagtg
gcgcgcctggagccggtccatgtcgccggcgtgctggtgagcaatgccaccctgcataac
gccgatgaaatcgaacgcttaggtctgaaaatcggcgacaaggtagtgattcgtcgggca
ggcgatgtgatcccgcaggtggtcaatgtggtgctttccgagcgtccggcggatgcccgg
gatgttgtcttcccgacccactgcccggtatgtcagtccgacgttgagcgagtggagggc
gaggcggtagcccgctgtacgggcggccttatctgcggcgcgcagcgtaaagagtcgctt
aagcacttcgtctcccgtcgcgcgctcgacgttgacggcatgggtgacaagatcatcgac
caactggtggagaaagagtatgtccatacgccggcggatctgttccgcctgagcgccggg
aaactcaccgggctggatcggatggggccgaagtccgcgcaaaatgtggtcaatgctttg
gaaaaagccaaagagacgaccttcgcacgcttcctctacgctctgggtattcgcgaggta
ggcgaagcgacagcggcggccctggcggcgcatttcggcactcttgaagccctggagcag
gcttccattgaggagctgcaaaaggtccctgatgttggcatcgtggttgccacccatacc
ttcaacttctttgccgaagagagtaaccgcgatgtcatcgcgcagctgctggccgaaggc
gttcactggccggcgccagtcgtggtgaaggcggaagagattgatagcccgtttgcgggt
aaaaccgtggtcctgaccggcagcctgagtcagctatcgcgggatgacgccaaagcgcgt
ctcgtcgcgctgggggcgaaggtggcaggcagtgtgtcgaagaaaactgacctggtgatt
gccggcgaagcggcgggttctaagctggcgaaagcgcaggagctgggcattgaggtgatt
gacgaagccgaaatgatgcgtctgctgggagaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (13)   
   Pfam (13)   
All databases (32)   

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