KEGG   Klebsiella variicola At-22: Kvar_4876
Entry
Kvar_4876         CDS       T01170                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
kva  Klebsiella variicola At-22
Pathway
kva03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:kva00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Kvar_4876
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:kva03021]
    Kvar_4876
   03400 DNA repair and recombination proteins [BR:kva03400]
    Kvar_4876
Enzymes [BR:kva01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Kvar_4876
Transcription machinery [BR:kva03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Kvar_4876
DNA repair and recombination proteins [BR:kva03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Kvar_4876
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: ADC60747
Position
complement(5191010..5195233)
AA seq 1407 aa
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELACPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERNQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLRNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDENGEFVAKTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKYEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEHWCDLLEENSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHLINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIRL
SNAKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMAKGDGEQVAGGETVANW
DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTSGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIESAGSSDFLEGEQVEYSRVKIANRELEANGKVAATYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEQPA
APQVSVEEASANLAELLNAGLGGSDND
NT seq 4224 nt   +upstreamnt  +downstreamnt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaagcctgagcgtgacggtctgttctgtgctcgt
attttcgggccagtaaaagactatgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgcggtgtgatctgtgagaagtgcggcgttgaagtgacccagactaaagtgcgtcgtgag
cgcatgggccacatcgagctggcatgcccgacggcgcacatctggttcctgaaatcgctg
ccgtcccgtatcggcctgctgctggatatgccgctgcgcgatatcgaacgtgtactgtac
ttcgaatcctacgtggttatcgaaggtggcatgaccaacctcgaacgcaaccagattctg
actgaagagcagtacctggatgcgctggaagagttcggtgacgaattcgacgcgaaaatg
ggtgcggaagcgatccaggcgctgctgcgcaatatggatctggagcaggaatgcgaacag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaagcgtaaaaagctgaccaagcgc
attaagctgctggaagcgttcgttcagtctggcaacaagccggaatggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggttccgctcgatggcggccgtttt
gcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccggacatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggttgacgccctgctggataacggccgtcgcggtcgtgcgatcaccggttctaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgttatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgctggagctgttcaaaccgttc
atttacggcaagctggaactgcgtggcctggccaccaccatcaaagccgctaagaaaatg
gttgagcgcgaagaagccgttgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcgccaacgctgcaccgtttaggtatccaggcattcgaaccggtt
ctgatcgaaggtaaagctattcagctgcacccgctggtttgtgcggcctataacgccgac
ttcgatggcgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtccccggcgaacggcgaaccaatcatc
gttccgtctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagcggagcgtatttatcgcgccggt
ctggcctctctgcatgcgcgcgttaaagtgcgtatcactgaatacgaaaaagacgagaat
ggtgaattcgtcgcgaagactagcctgaaagacacgaccgttggccgtgccattctgtgg
atgatcgtaccgaaaggtctgccgttctctatcgtgaaccaggcgctcggtaagaaagcg
atctccaagatgctgaacacctgttaccgtattctgggcctgaaaccgaccgttattttt
gcggaccagacgatgtacaccggctttgcttatgcagcgcgttcaggtgcatccgttggt
atcgatgacatggtcatcccggagaaaaaatacgaaatcatcagcgaagcggaagcggaa
gttgctgagattcaggaacagttccagtctggtctggtcaccgcgggcgagcgctacaac
aaagttatcgatatctgggctgcggcgaacgatcgtgtatccaaagcgatgatggataac
ctgcaaaccgaaaccgtgattaaccgtgacggtcaggaagagcagcaggtttccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctg
gctggtatgcgtggtctgatggcgaagccggatggctcgatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacccacggtgcgcgt
aaaggtctggcggataccgcactgaagacagcgaactccggttacctgactcgtcgtctg
gttgacgttgcccaggacctggtcgtcactgaagacgactgcggcaccctggaaggcatc
accatgacgccggttatcgaaggtggcgacgttaaagagccgctgcgcgatcgcgtactg
ggtcgtgtgactgctgaagacgttctgaagccgggtaccgcggacattctggttccacgc
aacacgctgctgcatgagcactggtgtgacctgctggaagagaactccgttgactccgtc
aaagttcgttccgttgtatcctgtgataccgactttggtgtatgtgcgcactgctatggt
cgtgacctggcgcgtggccacctcatcaacaaaggtgaggctatcggcgttatcgcggca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatccgtctg
agcaacgcgaagtcggttgtgaactccagcggtaaactggttatcacctcgcgtaacacc
gagctgaaactgatcgacgaattcggtcgtaccaaagaaagctataaagtgccttacggc
tccgttatggcgaaaggcgatggcgaacaggttgccggcggtgaaaccgttgcaaactgg
gatccgcataccatgccggttatcaccgaagtgagtggtttcgtccgcttcactgacatg
atcgacggccagaccattactcgtcagaccgacgaactgaccggtctgtcttcgctggtg
gttctggattccgcagaacgtacctccggtggtaaagatctgcgtccggcgctgaaaatt
gttgatgctcagggcaacgacgttctgatcccaggcaccgatatgccggctcagtacttc
ctgccgggtaaagcgattgttcagctggaagatggcgtacagatcagctctggtgacacc
ctggcgcgtgttccgcaggaatccggcggtaccaaggacatcaccggtggtctgccgcgc
gttgcggacctgttcgaagcacgtcgtccgaaagagccggcaatcctggctgaaatcagc
ggcatcatttccttcggtaaagaaaccaaagggaaacgtcgtctggttatcaccccggta
gacggtagcgaaccgtacgaagagatgattccgaaatggcgtcagctgaacgtgttcgaa
ggtgaacgtgtagaacgtggtgacgtggtttccgacggtccggaagcaccgcacgacatt
ctgcgtcttcgtggcgtgcacgcggtaacgcgttacatcaccaacgaagtgcaggacgtt
taccgtctgcaaggcgttaagattaacgataagcacattgaagttatcgttcgtcagatg
ctgcgtaaagcgaccatcgaaagtgctggtagctccgacttcctcgaaggcgagcaggtt
gaatactcccgcgttaagatcgctaaccgcgagcttgaagcgaatggcaaagtggcggca
acctattcccgcgacctgctgggtatcaccaaagcgtctctggcaaccgagtccttcatc
tccgcggcctcgttccaggagaccactcgcgtgctgaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggtctgaaagagaacgtcatcgtgggtcgtctgatcccggcgggt
accggttatgcgtaccaccaggatcgtatgcgccgtcgcgcagcgggcgaacagccagct
gctccgcaggtgagcgtagaagaagcgtctgccaacctggcagaactgctgaacgcaggc
ctgggcggttctgacaacgattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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