KEGG   Kurthia zopfii: NCTC404_00467
Entry
NCTC404_00467     CDS       T05934                                 
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
kzo  Kurthia zopfii
Pathway
kzo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:kzo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NCTC404_00467 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:kzo03021]
    NCTC404_00467 (rho)
   03019 Messenger RNA biogenesis [BR:kzo03019]
    NCTC404_00467 (rho)
Transcription machinery [BR:kzo03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     NCTC404_00467 (rho)
Messenger RNA biogenesis [BR:kzo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     NCTC404_00467 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB ATPase_2 AAA AAA_22 AAA_25 Spore_III_AA NACHT Mor
Other DBs
NCBI-ProteinID: VEI05111
Position
1:complement(505446..506729)
AA seq 427 aa
MPALTISQLEDMKLKDLYALAKEYKISYYSKLTKKELIFAILKSRAEREGYFFMEGVLEI
ISQEGFGFLRPINYSASSEDIYISASQIRRFSLRNGDKVTGKVRPPKENERYYGLLHVEA
VNGENPETAKERVHFPALTPLYPDRQIKLETTKENLSTRIMDLVAPVGFGQRGLIVAPPK
AGKTLLIKEIANSVTEKYPEAELIVLLIDERPEEVTDIERSVQADVVSSTFDELPENHVK
VAELVLERAMRLVEHKRDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GAARNIEEGGSLTILATALVDTGSRMDEVIYEEFKGTGNLELHLDRNLAERRIFPAIDIR
RSGTRKEELLIPKEQLNKLWAIRKTFADSPDFTERFLRKIRPTATNEEFFEKLDSGMKKA
TNGKGLI
NT seq 1284 nt   +upstreamnt  +downstreamnt
atgccagcattaacaatttcccaattggaagacatgaaattaaaggatctatatgcttta
gcgaaggaatataaaatttcttactatagcaaattaacgaaaaaagaattaattttcgcg
atattaaaatctcgtgccgaaagagaaggctatttcttcatggaaggcgtactcgaaatt
atttcacaagaaggttttggctttttacgtcctattaactattcagcaagttcagaagat
atttatatttccgcttcacaaattcgtcgtttcagtttaagaaacggagataaagtaacg
ggtaaagttcgtccaccaaaagaaaacgaacgttactacggcctattacatgtagaagct
gtaaatggtgaaaatccagaaacagcgaaagaacgcgtccatttcccagctttgacacct
ttatatccagaccgtcaaatcaaattggaaacgacgaaagagaatttatctacacgtatt
atggatttagtcgcgccagttggatttggtcaacgtggtttaatcgtagctcctccaaaa
gcgggtaaaactttacttattaaagaaattgccaactcggttacggagaaatatccggaa
gcagaattgatcgttctattaattgatgagcgcccagaggaagtaacggatattgagcgt
tcagttcaggcggatgttgtgagttctacatttgatgaattaccagaaaatcatgtgaaa
gttgccgagcttgttttagaaagagcgatgcgactagtggagcataagcgtgatgtcatc
atcttaatggattcaattactcgacttgcgcgtgcttataacttagtcattccaccaagt
ggtcgtacactttcaggtgggatcgatccagcagcattccatcgtccaaaacgattcttc
ggtgcggcacgtaatattgaagaaggcggtagcttaacgattttagcaactgcattagtc
gacacgggttctcgcatggatgaagtcatctatgaggaattcaaaggaacagggaactta
gagttgcatctagaccgtaatttagcagaacgccgtattttcccagcgattgatattcgc
cgctctggtacgcgtaaagaagaattattgattccaaaagaacagttgaataaactatgg
gcgattcgtaaaacatttgcggattcacctgatttcactgaacgtttcctaaggaaaatc
cgtccaacagcaacgaatgaagaatttttcgaaaagcttgattcaggaatgaaaaaggcg
acgaatggcaaaggcttaatctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (11)   
   Pfam (11)   
All databases (18)   

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