KEGG   Lysobacter antibioticus 76: LA76x_0297
Entry
LA76x_0297        CDS       T04154                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
lab  Lysobacter antibioticus 76
Pathway
lab03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lab00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LA76x_0297 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lab03021]
    LA76x_0297 (rho)
   03019 Messenger RNA biogenesis [BR:lab03019]
    LA76x_0297 (rho)
Transcription machinery [BR:lab03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     LA76x_0297 (rho)
Messenger RNA biogenesis [BR:lab03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     LA76x_0297 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT Spore_III_AA AAA_25 AAA OB_RNB AAA_22 ResIII
Other DBs
NCBI-ProteinID: ALN78459
UniProt: A0A0S2F4K6
Position
complement(339925..341205)
AA seq 426 aa
MPEGFPQYSLGDLKRMPAPKLLDLADQLSIQEGVARARKQDVIFALLKVLTRHGEGVAAD
GVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIRFPKDGERYFA
LSVVDSINGEPLEASKNKVLFENLTPLFPRRKFKLERGDGSTEDITGRILDLMAPQGKGQ
RALIVSPPKAGKTMMMQQVATAITHNHPDVHLIVLLVDERPEEVTEMQRTVRGEVVSSTF
DEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDAN
ALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNSEVHLNRRIAEK
RVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHGMDEIGAMEFLLDKMKTTKSNDEF
FSSMKR
NT seq 1281 nt   +upstreamnt  +downstreamnt
gtgcccgaaggcttcccgcagtactcgctgggcgacctcaagcgcatgccggcgccgaag
ctgctcgacctggccgaccagctcagcatccaggaaggcgtggcccgcgcccgcaagcag
gacgtcatcttcgccctgctcaaggtactgacccgccacggcgaaggcgtcgccgccgac
ggcgtgctggaaatcctgcccgacggcttcggcttcctgcgcgcggccgaggcctcctac
ctcgccggcccggacgacacctacatctcgccgagccagatccgccgcttcaacctgcgc
accggcgaccatctgtcgggccgcatccgcttcccgaaggacggcgagcgttatttcgcc
ctgtcggtggtcgacagcatcaacggcgagccgctggaagcgtcgaagaacaaggtcctg
ttcgagaacctgaccccgctgttcccgcgccgcaagttcaagctcgagcgcggcgacggt
tcgaccgaagacatcaccggccgcatcctcgacctgatggcgccgcaaggcaaaggccag
cgcgccttgatcgtctcgccgcccaaggccggcaagacgatgatgatgcagcaggtcgcc
acggcgatcacccacaaccacccggacgtgcacctgatcgtgctgctggtcgacgagcgt
ccggaagaagtgaccgaaatgcagcgcaccgtgcgcggcgaagtggtctcctcgaccttc
gacgaaccggccgcgcgtcacgtccaggtcgccgaaatggtgatcgagcgcgccaagcgc
ctggtcgaacacaagaaggacgtggtgatcctgctcgactcgatcacccgtctggcccgc
gcctacaacaacgtcgtgccgagttccggcaaggtcttgtcgggcggcgtcgacgccaac
gccctgcaccgtccgaagcgcttcttcggcgccgcgcgtaatgtcgaagaaggcggctcg
ctgacgatcatcgccaccgcgctgatcgacaccggcagcaagatggacgaggtgatctac
gaagagttcaagggcaccggcaactcggaagtccacttgaaccgtcgcatcgccgaaaag
cgcgtgtacccggccatcgacatcaaccgttccggcacccgccgcgaggatttgctgatc
gaaccggagctgctgcagaagatctggattctgcgcaagctgctgcacggcatggacgaa
atcggcgcgatggaattcctgctcgacaagatgaagaccaccaagtcgaacgacgagttc
ttcagttcgatgaagcgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (22)   

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